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Updated: Jun 27, 2026

Evaluation of Substrate Ubiquitylation by E3 Ubiquitin-ligase in Mammalian Cell Lysates
Published on: May 10, 2022
The E3 ubiquitin ligase WWP1 selectively targets HER4 and its proteolytically derived signaling isoforms for
Shu-Mang Feng1, Rebecca S Muraoka-Cook, Debra Hunter
1UNC Lineberger Comprehensive Cancer Center, University of North Carolina Chapel Hill, Chapel Hill, North Carolina 27599, USA.
Abstract:
In general, epidermal growth factor receptor family members stimulate cell proliferation. In contrast, at least one HER4 isoform, JM-a/Cyt1, inhibits cell growth after undergoing a two-step proteolytic cleavage that first produces a membrane-anchored 80-kDa fragment (m80(HER4)) and subsequently liberates a soluble 80-kDa fragment, s80(HER4). Here we report that s80(HER4) Cyt1 action increased the expression of WWP1 (for WW domain-containing protein 1), an E3 ubiquitin ligase, but not other members of the Nedd4 E3 ligase family. The HER4 Cyt1 isoform contains three proline-rich tyrosine (PY) WW binding motifs, while Cyt2 has only two. WWP1 binds to all three Cyt1 PY motifs; the interaction with PY2 found exclusively in Cyt1 was strongest. WWP1 ubiquitinated and caused the degradation of HER4 but not of EGFR, HER2, or HER3. The HER4-WWP1 interaction also accelerated WWP1 degradation. Membrane HER4 (full length and m80(HER4), the product of the first proteolytic cleavage) were the preferred targets of WWP1, correlating with the membrane localization of WWP1. Conversely s80(HER4), a poorer WWP1 substrate, was found in the cell nucleus, while WWP1 was not. Deletion of the C2 membrane association domain of WWP1 allowed more efficient s80(HER4) degradation, suggesting that WWP1 is normally part of a membrane complex that regulates HER4 membrane species levels, with a predilection for the growth-inhibitory Cyt1 isoform. Finally, WWP1 expression diminished HER4 biologic activity in MCF-7 cells. We previously showed that nuclear s80(HER4) is ubiquitinated and degraded by the anaphase-promoting complex, suggesting that HER4 ubiquitination within specific cellular compartments helps regulate the unique HER4 signaling capabilities.
Insights
The WWP1 E3 ubiquitin ligase targets the growth-inhibitory HER4 Cyt1 isoform, promoting its degradation and reducing HER4 signaling. This interaction highlights a novel mechanism for regulating HER4 activity.
Area of Science:
- Cellular Biology
- Molecular Oncology
- Signal Transduction
Background:
- Epidermal growth factor receptor (EGFR) family members typically promote cell proliferation.
- A specific HER4 isoform, JM-a/Cyt1, inhibits cell growth via proteolytic cleavage into membrane-anchored (m80(HER4)) and soluble (s80(HER4)) fragments.
Purpose of the Study:
- To investigate the interaction between HER4 Cyt1 fragments and E3 ubiquitin ligases.
- To elucidate the role of WWP1 in regulating HER4 activity and localization.
Main Methods:
- Assessing WWP1 expression in response to s80(HER4) Cyt1.
- Analyzing WWP1 binding to HER4 Cyt1 motifs using co-immunoprecipitation.
- Evaluating ubiquitination and degradation of HER4 family members by WWP1.
- Investigating the impact of WWP1 localization on substrate preference.
- Assessing the effect of WWP1 on HER4 biological activity in MCF-7 cells.
Main Results:
- s80(HER4) Cyt1 increased WWP1 expression, an E3 ubiquitin ligase.
- WWP1 specifically bound to and ubiquitinated HER4 Cyt1, leading to its degradation, while sparing other EGFR family members.
- Membrane-bound HER4 (full-length and m80(HER4)) were preferential WWP1 substrates.
- WWP1-mediated degradation of HER4 was accelerated.
- WWP1 expression reduced HER4's growth-inhibitory activity in MCF-7 cells.
Conclusions:
- WWP1 targets the growth-inhibitory HER4 Cyt1 isoform for degradation, particularly membrane-associated forms.
- The interaction between WWP1 and HER4 Cyt1 regulates HER4 signaling and biological activity.
- Compartment-specific ubiquitination of HER4 is crucial for its diverse signaling functions.
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