Related Experiment Video
Updated: Jun 27, 2026

Analysis of Group IV Viral SSHHPS Using In Vitro and In Silico Methods
Published on: December 21, 2019
A conserved domain in the leader proteinase of foot-and-mouth disease virus is required for proper subcellular
Teresa de los Santos1, Fayna Diaz-San Segundo, James Zhu
1Plum Island Animal Disease Center, U.S. Department of Agriculture, Greenport, New York 11944, USA. teresa.delossantos@ars.usda.gov
Abstract:
The leader proteinase (L(pro)) of foot-and-mouth disease virus (FMDV) is involved in antagonizing the innate immune response by blocking the expression of interferon (IFN) and by reducing the immediate-early induction of IFN-beta mRNA and IFN-stimulated genes. In addition to its role in shutting off cap-dependent host mRNA translation, L(pro) is associated with the degradation of the p65/RelA subunit of nuclear factor kappaB (NF-kappaB). Bioinformatics analysis suggests that L(pro) contains a SAP (for SAF-A/B, Acinus, and PIAS) domain, a protein structure associated in some cases with the nuclear retention of molecules involved in transcriptional control. We have introduced a single or a double mutation in conserved amino acid residues contained within this domain of L(pro). Although three stable mutant viruses were obtained, only the double mutant displayed an attenuated phenotype in cell culture. Indirect immunofluorescence analysis showed that L(pro) subcellular distribution is altered in cells infected with the double mutant virus. Interestingly, nuclear p65/RelA staining disappeared from wild-type (WT) FMDV-infected cells but not from double mutant virus-infected cells. Consistent with these results, NF-kappaB-dependent transcription was not inhibited in cells infected with double mutant virus in contrast to cells infected with WT virus. However, degradation of the translation initiation factor eIF-4G was very similar for both the WT and the double mutant viruses. Since L(pro) catalytic activity was demonstrated to be a requirement for p65/RelA degradation, our results indicate that mutation of the SAP domain reveals a novel separation-of-function activity for FMDV L(pro).
Insights
Mutating the SAP domain of foot-and-mouth disease virus leader proteinase (L(pro)) attenuates viral replication. This mutation prevents L(pro) from degrading the NF-kappaB p65/RelA subunit, preserving innate immune responses.
Area of Science:
- Virology
- Immunology
- Molecular Biology
Background:
- Foot-and-mouth disease virus (FMDV) leader proteinase (L(pro)) antagonizes innate immunity by inhibiting interferon (IFN) production.
- L(pro) blocks host mRNA translation and degrades the NF-kappaB p65/RelA subunit.
Purpose of the Study:
- To investigate the role of the SAP domain within FMDV L(pro) in viral pathogenesis.
- To determine if mutations in the SAP domain affect L(pro)'s interaction with NF-kappaB and innate immune signaling.
Main Methods:
- Site-directed mutagenesis was used to create single and double mutants within the L(pro) SAP domain.
- Mutant viruses were analyzed for replication efficiency, L(pro) subcellular localization, p65/RelA degradation, and NF-kappaB transcriptional activity.
Main Results:
- A double mutant virus exhibited an attenuated phenotype in cell culture.
- The double mutant L(pro) showed altered subcellular distribution and failed to degrade p65/RelA.
- NF-kappaB-dependent transcription remained active in cells infected with the double mutant virus, unlike WT FMDV infection.
- Degradation of the translation factor eIF-4G was unaffected by the SAP domain mutations.
Conclusions:
- Mutation of the FMDV L(pro) SAP domain separates its functions, specifically preventing p65/RelA degradation while maintaining translational shutoff.
- This finding highlights a novel mechanism by which FMDV L(pro) modulates the host immune response and suggests potential therapeutic targets.
More Related Videos
Related Concept Videos
Leaky Scanning
Conservation of Protein Domains Over Different Proteins
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to form...
Conserved Binding Sites
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...
Directing Proteins to the Rough Endoplasmic Reticulum
Protein Translocation Machinery on the ER Membrane
Sec61 protein conducting channel
In eukaryotes, the translocon complex comprises a core heterotrimeric translocator channel called the Sec61 complex. This channel includes three transmembrane proteins, Sec61α, Sec61β, and Sec61γ, and is the largest subunit of the translocon complex.
Mechanical Protein Function

