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Related Concept Videos

Single Nucleotide Polymorphisms-SNPs01:05

Single Nucleotide Polymorphisms-SNPs

A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
Immunodeficiency Diseases01:25

Immunodeficiency Diseases

Immunodeficiency disorders are conditions in which the immune system's ability to fight infectious disease and cancer is compromised or entirely absent. The immune system comprises a complex network of cells, tissues, and organs that work together to protect the body from potentially harmful invaders. When this system is deficient or not functioning properly, it leaves the body susceptible to infections, diseases, or other complications.
There are three main causes of immunodeficiency disorders...
Comparing Copy Number Variations and SNPs02:26

Comparing Copy Number Variations and SNPs

Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Principles of Pharmacogenetics: Types of Genetic Variants01:27

Principles of Pharmacogenetics: Types of Genetic Variants

The human genome is over 99.9% identical between individuals, yet genetic differences exist at millions of bases. The human genome contains approximately 3 million variant positions per individual, many of which are heterozygous, contributing to genetic diversity and individual traits. Genetic variations include single-nucleotide polymorphisms (SNPs), insertions, deletions, and copy number variations (CNVs).SNPs, the most common variation, involve single-base changes in DNA. These can be...
Inflammatory Bowel Disease III: Crohn's Disease01:25

Inflammatory Bowel Disease III: Crohn's Disease

Crohn’s disease is a chronic, relapsing form of inflammatory bowel disease characterized by segmental, transmural inflammation that can affect any part of the gastrointestinal tract. Its pathogenesis arises from a combination of genetic susceptibility, environmental exposures, epithelial barrier dysfunction, and immune dysregulation. Together, these factors lead to an exaggerated immune response against components of the gut microbiome.Genetic and Environmental InfluencesMultiple genetic...
Exon Recombination02:32

Exon Recombination

The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes. 
Exon shuffling follows “splice frame rules.” Each exon has three reading...

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Related Experiment Video

Updated: Jun 27, 2026

Primary Sjogren's Syndrome Associated with Lung Adenocarcinoma: Probing the Potential Common Pathogenic Mechanisms and Experimental Verification
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Primary Sjogren's Syndrome Associated with Lung Adenocarcinoma: Probing the Potential Common Pathogenic Mechanisms and Experimental Verification

Published on: September 20, 2024

Proinflammatory cytokine gene single nucleotide polymorphisms in common variable immunodeficiency.

N Rezaei1, A A Amirzargar, Y Shakiba

  • 1Immunology, Asthma and Allergy Research Institute, Tehran University of Medical Sciences, Tehran, Iran. rezaei_nima@hbi.ir

Clinical and Experimental Immunology
|December 17, 2008
PubMed
Summary

Genetic variations in proinflammatory cytokine genes are linked to common variable immunodeficiency (CVID). Specific single nucleotide polymorphisms and haplotypes of IL-6 and TNF-alpha genes were found to be significantly associated with CVID.

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Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
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Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry

Published on: June 21, 2018

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Last Updated: Jun 27, 2026

Primary Sjogren's Syndrome Associated with Lung Adenocarcinoma: Probing the Potential Common Pathogenic Mechanisms and Experimental Verification
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Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
05:53

Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry

Published on: June 21, 2018

Area of Science:

  • Immunology
  • Genetics

Background:

  • Common variable immunodeficiency (CVID) is a complex primary immunodeficiency.
  • Cytokine production alterations may contribute to CVID pathogenesis.
  • Genetic polymorphisms in cytokine genes are potential contributing factors.

Purpose of the Study:

  • To investigate the association between proinflammatory cytokine gene single nucleotide polymorphisms (SNPs) and CVID.
  • To compare allele and genotype frequencies of specific cytokine genes between CVID patients and healthy controls.

Main Methods:

  • Genotyping and frequency analysis of SNPs in tumor necrosis factor-alpha (TNF-alpha), interleukin-1alpha (IL-1alpha), IL-1beta, IL-1 receptor (IL-1R), IL-1 receptor antagonist (IL-1RA), and IL-6 genes.
  • Comparison of genotype and haplotype frequencies between CVID patients and controls.

Main Results:

  • Significant differences in allele and genotype frequencies for IL-6 (nt565, -174) and TNF-alpha (-308) were observed between CVID patients and controls.
  • Specific IL-6 (CA, GA) and TNF-alpha (GA) haplotypes were more frequent in patients, while others (TNF-alpha GA, IL-6 GG) were decreased.
  • Findings suggest a potential role for cytokine gene polymorphisms in CVID pathophysiology, possibly leading to elevated TNF-alpha production in some patients.

Conclusions:

  • Cytokine gene single nucleotide polymorphisms are associated with common variable immunodeficiency.
  • Specific genetic variations in IL-6 and TNF-alpha may influence CVID susceptibility and disease mechanisms.
  • Further research into cytokine gene polymorphisms could elucidate CVID pathogenesis and inform potential therapeutic strategies.