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Labeling DNA Probes03:31

Labeling DNA Probes

DNA probes are fragments of DNA labeled with a reporter tag to enable their detection or purification. The resulting labeled DNA probes can then hybridize to target nucleic acid sequences through complementary base-pairing, and may be used to recover or identify these regions.
Radioisotopes, fluorophores, or small molecule binding partners like biotin or digoxigenin, are the most widely used reporter tags for labeling DNA probes. These labels can be attached to the probe DNA molecule via...

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A Method for Selecting Structure-switching Aptamers Applied to a Colorimetric Gold Nanoparticle Assay
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A simple and sensitive colorimetric pH meter based on DNA conformational switch and gold nanoparticle aggregation.

Cuie Chen1, Guangtao Song, Jinsong Ren

  • 1State Key Laboratory of Rare Earth Resources Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, 130022.

Chemical Communications (Cambridge, England)
|December 17, 2008
PubMed
Summary

A novel colorimetric pH meter utilizes DNA conformational changes and gold nanoparticle aggregation for rapid measurements. This nanotechnology achieves high accuracy across the physiological pH range.

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Area of Science:

  • Biotechnology
  • Nanotechnology
  • Analytical Chemistry

Background:

  • Accurate and rapid pH monitoring is crucial in various scientific fields.
  • Existing pH measurement methods can be complex or slow.

Purpose of the Study:

  • To develop a simple, rapid, and accurate colorimetric pH meter.
  • To leverage the properties of i-motif DNA and gold nanoparticles (AuNPs) for pH sensing.

Main Methods:

  • Development of a pH meter based on the conformational switch of i-motif DNA.
  • Utilizing non-crosslinking gold nanoparticle aggregation as a colorimetric indicator.
  • Testing the device's accuracy across the physiological pH range.

Main Results:

  • A functional colorimetric pH meter was successfully developed.
  • The device demonstrated rapid and simple operation.
  • Average accuracy was determined to be +/-0.04 pH unit within the physiological range.

Conclusions:

  • The developed i-motif DNA and AuNP-based sensor offers a promising new method for pH measurement.
  • This nanotechnology provides a simple and accurate alternative for real-time pH monitoring.