Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Heating and Cooling Curves02:44

Heating and Cooling Curves

When a substance—isolated from its environment—is subjected to heat changes, corresponding changes in temperature and phase of the substance is observed; this is graphically represented by heating and cooling curves.
For instance, the addition of heat raises the temperature of a solid; the amount of heat absorbed depends on the heat capacity of the solid (q = mcsolidΔT). According to thermochemistry, the relation between the amount of heat absorbed or released by a substance, q, and its...
Entropy Changes Accompanying Specific Processes01:21

Entropy Changes Accompanying Specific Processes

Entropy, a measure of disorder in a system, changes during phase transitions like freezing or boiling. At the transition temperature Ttrs, where two phases are in equilibrium, the phase transition is a reversible process. The entropy change can be calculated from a substance's enthalpy of transition using the equation ΔStrs = ΔtrsH /Ttrs.When a perfect gas expands isothermally from one volume to another, entropy increases logarithmically with volume. Conversely, isothermal compression results...
Temperature Dependence on Reaction Rate02:55

Temperature Dependence on Reaction Rate

The Collision Theory
Atoms, molecules, or ions must collide before they can react with each other. Atoms must be close together to form chemical bonds. This premise is the basis for a theory that explains many observations regarding chemical kinetics, including factors affecting reaction rates.
The collision theory is based on the postulates that (i) the reaction rate is proportional to the rate of reactant collisions, (ii) the reacting species collide in an orientation allowing contact between...
Entropy02:39

Entropy

Salt particles that have dissolved in water never spontaneously come back together in solution to reform solid particles. Moreover, a gas that has expanded in a vacuum remains dispersed and never spontaneously reassembles. The unidirectional nature of these phenomena is the result of a thermodynamic state function called entropy (S). Entropy is the measure of the extent to which the energy is dispersed throughout a system, or in other words, it is proportional to the degree of disorder of a...
Entropy01:18

Entropy

The first law of thermodynamics is quantitatively formulated via an equation relating the internal energy of a system, the heat exchanged by it, and the work done on it. A quantitative formulation of the second law of thermodynamics leads to defining a state function, the entropy.
When an ideal gas expands isothermally, the disorder in the gas increases. From the molecular perspective, the gas molecules have more volume to move around in.
Consider an infinitesimal step in the expansion, which...
Phase Transitions: Melting and Freezing02:39

Phase Transitions: Melting and Freezing

Heating a crystalline solid increases the average energy of its atoms, molecules, or ions, and the solid gets hotter. At some point, the added energy becomes large enough to partially overcome the forces holding the molecules or ions of the solid in their fixed positions, and the solid begins the process of transitioning to the liquid state or melting. At this point, the temperature of the solid stops rising, despite the continual input of heat, and it remains constant until all of the solid is...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

VENUSpy: A Chemical Dynamics Simulation Program in the Era of Machine Learning and Exascale Computing.

Journal of chemical theory and computation·2025
Same author

Chemist: A Domain-Specific Language by Chemists for Chemists.

The journal of physical chemistry. A·2025
Same author

Modeling the subsurface adsorption of atomic oxygen in silver from high vacuum to high pressure.

Physical chemistry chemical physics : PCCP·2025
Same author

A Platform Approach for Designing Sustainable Indole Thiosemicarbazone Corrosion Inhibitors with Enhanced Adsorption Properties.

Langmuir : the ACS journal of surfaces and colloids·2025
Same author

Projector-Based Quantum Embedding Study of Iron Complexes.

Journal of computational chemistry·2025
Same author

DFT investigation of the impact of inner-sphere water molecules on RE nitrate binding to internal pore and external surface of MCM-22.

Physical chemistry chemical physics : PCCP·2024
Same journal

Kinetic and Mechanistic Insights into H-Abstraction and Subsequent Isomerization and Decomposition of Monoglyme and Key Combustion Intermediates.

The journal of physical chemistry. A·2026
Same journal

First-Principles Analysis of Protonation-Induced Electronic Effects in Tetrakis(<i>p</i>-aminophenyl)porphyrin (TAPP).

The journal of physical chemistry. A·2026
Same journal

Exploring the Reactivity of the CH Radical toward Nitrous Oxide in the Context of the Interstellar Medium.

The journal of physical chemistry. A·2026
Same journal

Infrared Photodissociation Spectroscopy of Benzene-V<sup>+</sup>(CO)<sub>n</sub> "Piano Stool" Cations.

The journal of physical chemistry. A·2026
Same journal

Correction to "Solvent-Dependent Ultrafast Photochemical Dynamics of <i>N</i>-Methyl Oxindole Overcrowded Alkene Molecular Motors".

The journal of physical chemistry. A·2026
Same journal

Accelerating the Discovery of Superhalogens via Physics-Informed Graph Neural Networks.

The journal of physical chemistry. A·2026
See all related articles

Related Experiment Video

Updated: Jun 26, 2026

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package
06:37

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package

Published on: September 17, 2021

Temperature scaling method for Markov chains.

Lonnie D Crosby1, Theresa L Windus

  • 1Department of Chemistry, Iowa State University and Ames Laboratory, Ames, Iowa 50010, USA.

The Journal of Physical Chemistry. A
|December 26, 2008
PubMed
Summary
This summary is machine-generated.

Computational expense in Monte Carlo simulations for water cluster nucleation kinetics can be reduced. A novel Markov chain temperature-scaling (TeS) method allows simulations at one temperature to be scaled to others, saving significant computational resources.

More Related Videos

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
09:17

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

Published on: March 1, 2022

Orientational Transition in a Liquid Crystal Triggered by the Thermodynamic Growth of Interfacial Wetting Sheets
06:26

Orientational Transition in a Liquid Crystal Triggered by the Thermodynamic Growth of Interfacial Wetting Sheets

Published on: May 15, 2017

Related Experiment Videos

Last Updated: Jun 26, 2026

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package
06:37

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package

Published on: September 17, 2021

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
09:17

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

Published on: March 1, 2022

Orientational Transition in a Liquid Crystal Triggered by the Thermodynamic Growth of Interfacial Wetting Sheets
06:26

Orientational Transition in a Liquid Crystal Triggered by the Thermodynamic Growth of Interfacial Wetting Sheets

Published on: May 15, 2017

Area of Science:

  • Computational Chemistry
  • Physical Chemistry
  • Chemical Physics

Background:

  • Ab initio potentials in Monte Carlo simulations for nucleation kinetics are computationally expensive.
  • Investigating temperature dependence of kinetic properties necessitates simulations at multiple temperatures, increasing computational cost.

Purpose of the Study:

  • To introduce and validate a Markov chain temperature-scaling (TeS) method.
  • To reduce the computational expense of simulations investigating temperature-dependent kinetic properties.
  • To demonstrate the general applicability of TeS for various simulation applications.

Main Methods:

  • Developed a Markov chain temperature-scaling (TeS) method.
  • Applied TeS to a 1-D analytical potential with known exact solutions.
  • Utilized TeS with the Dang-Chang polarizable classical potential for water clusters (2-5 monomers).
  • Employed Dynamical Nucleation Theory to determine monomer loss evaporation rate constants.

Main Results:

  • Demonstrated that Markov chains from one temperature can be scaled to others without additional simulations.
  • Validated the TeS method using a 1-D analytical potential.
  • Obtained statistical properties for water clusters at various temperatures using scaled Markov chains.
  • Determined evaporation rate constants for water clusters.

Conclusions:

  • The TeS method significantly reduces computational cost for temperature-dependent simulations.
  • TeS provides accurate results comparable to direct simulations.
  • This method is broadly applicable to various simulation studies requiring temperature variations.