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Published on: August 15, 2019
Quantifying dominance and deleterious effect on human disease genes.
Naoki Osada1, Shuhei Mano, Jun Gojobori
1National Institute of Biomedical Innovation, 7-6-8 Saito-Asagi, Ibaraki, Osaka 567-0085, Japan. nosada@nibio.go.jp
Investigating human disease genes reveals that both dominant and recessive disease genes have higher mutation rates. Recessive disease genes show more nonsynonymous variations, indicating fundamentally different mutation effects.
Area of Science:
- Genetics
- Evolutionary Biology
- Human Disease Research
Background:
- Understanding human inherited disease genes is crucial for disease research.
- Investigating genetic polymorphism and divergence aids in elucidating natural selection's impact on disease genes.
Purpose of the Study:
- To analyze polymorphism and divergence in human disease genes.
- To determine the effect of natural selection on disease genes, considering disease dominance.
- To differentiate the impact of dominant versus recessive disease mutations.
Main Methods:
- Comparative analysis of mutation rates and protein lengths between disease and non-disease genes.
- Utilizing an unbiased polymorphism dataset to compare nonsynonymous polymorphisms in dominant disease genes (DDG) and recessive disease genes (RDG).
- Estimating selection intensity using polymorphism and divergence data, while accounting for disease dominance effects.
Main Results:
- Both DDG and RDG exhibit higher mutation rates per site and encode longer proteins than non-disease genes.
- RDG proportionally harbor more nonsynonymous polymorphisms compared to DDG.
- Selection intensity on RDG remains significantly different from DDG even after considering dominance, suggesting distinct mutation effects.
Conclusions:
- Human disease genes are under different evolutionary pressures compared to non-disease genes.
- The fundamental deleterious effects of dominant and recessive disease mutations differ significantly.
- Further research into disease gene evolution can inform strategies for understanding and treating inherited diseases.
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