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Updated: Jun 26, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Rapid DNA double-strand breaks resulting from processing of Cr-DNA cross-links by both MutS dimers
Mindy F Reynolds1, Elizabeth C Peterson-Roth, Ivan A Bespalov
1Department of Pathology, Laboratory Medicine, Brown University, Providence, Rhode Island 02912 , USA.
Abstract:
Mismatch repair (MMR) strongly enhances cyto- and genotoxicity of several chemotherapeutic agents and environmental carcinogens. DNA double-strand breaks (DSB) formed after two replication cycles play a major role in MMR-dependent cell death by DNA alkylating drugs. Here, we examined DNA damage detection and the mechanisms of the unusually rapid induction of DSB by MMR proteins in response to carcinogenic chromium(VI). We found that MSH2-MSH6 (MutSalpha) dimer effectively bound DNA probes containing ascorbate-Cr-DNA and cysteine-Cr-DNA cross-links. Binary Cr-DNA adducts, the most abundant form of Cr-DNA damage, were poor substrates for MSH2-MSH6, and their toxicity in cells was weak and MMR independent. Although not involved in the initial recognition of Cr-DNA damage, MSH2-MSH3 (MutSbeta) complex was essential for the induction of DSB, micronuclei, and apoptosis in human cells by chromate. In situ fractionation of Cr-treated cells revealed MSH6 and MSH3 chromatin foci that originated in late S phase and did not require replication of damaged DNA. Formation of MSH3 foci was MSH6 and MLH1 dependent, whereas MSH6 foci were unaffected by MSH3 status. DSB production was associated with progression of cells from S into G(2) phase and was completely blocked by the DNA synthesis inhibitor aphidicolin. Interestingly, chromosome 3 transfer into MSH3-null HCT116 cells activated an alternative, MSH3-like activity that restored dinucleotide repeat stability and sensitivity to chromate. Thus, sequential recruitment and unprecedented cooperation of MutSalpha and MutSbeta branches of MMR in processing of Cr-DNA cross-links is the main cause of DSB and chromosomal breakage at low and moderate Cr(VI) doses.
Insights
Mismatch repair (MMR) proteins, MutSalpha and MutSbeta, cooperate to cause DNA double-strand breaks (DSB) from chromium(VI) damage. This MMR-dependent DSB induction leads to cell death and chromosomal breakage.
Area of Science:
- Molecular Biology
- Genotoxicology
- DNA Repair
Background:
- Mismatch repair (MMR) enhances the toxicity of chemotherapeutic agents and carcinogens.
- DNA double-strand breaks (DSB) are crucial in MMR-dependent cell death induced by DNA alkylating drugs.
- Carcinogenic chromium(VI) rapidly induces DSB through mechanisms not fully understood.
Purpose of the Study:
- To investigate DNA damage detection mechanisms by MMR proteins in response to chromium(VI).
- To elucidate the role of MMR proteins, specifically MutSalpha (MSH2-MSH6) and MutSbeta (MSH2-MSH3), in chromium-induced DSB formation.
- To understand the sequential recruitment and cooperation of MMR pathways in processing chromium-DNA cross-links.
Main Methods:
- Binding assays using DNA probes with ascorbate-Cr-DNA and cysteine-Cr-DNA cross-links.
- Cellular assays measuring DSB, micronuclei, and apoptosis in human cells treated with chromate.
- In situ fractionation to identify MSH6 and MSH3 chromatin foci formation.
- Inhibition studies using aphidicolin to block DNA synthesis.
- Chromosome transfer experiments into MSH3-null cells.
Main Results:
- MSH2-MSH6 (MutSalpha) bound effectively to specific Cr-DNA cross-links, but not to binary Cr-DNA adducts.
- MSH2-MSH3 (MutSbeta) was essential for DSB, micronuclei, and apoptosis induction by chromate, despite not being involved in initial damage recognition.
- MSH6 and MSH3 chromatin foci formed in late S phase, dependent on MSH6 and MLH1 for MSH3 foci.
- DSB production correlated with S to G2 phase progression and was blocked by aphidicolin.
- Alternative MSH3-like activity restored chromate sensitivity in MSH3-null cells.
Conclusions:
- Sequential recruitment and cooperation between MutSalpha and MutSbeta are critical for DSB and chromosomal breakage induced by chromium(VI).
- MMR-dependent processing of Cr-DNA cross-links is the primary mechanism for DSB induction at low to moderate chromium(VI) doses.
- The findings reveal a novel mechanism of MMR involvement in genotoxicity mediated by chromium compounds.
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