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Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions
Published on: June 28, 2018
The chromatin remodelling factor BRG1 is a novel binding partner of the tumor suppressor p16INK4a
Therese M Becker1, Sebastian Haferkamp, Menno K Dijkstra
1Westmead Institute for Cancer Research, University of Sydney, Westmead Millennium Institute and Westmead Hospital, Australia. therese_becker@wmi.usyd.edu.au
Background:
CDKN2A/p16INK4a is frequently altered in human cancers and it is the most important melanoma susceptibility gene identified to date. p16INK4a inhibits pRb phosphorylation and induces cell cycle arrest, which is considered its main tumour suppressor function. Nevertheless, additional activities may contribute to the tumour suppressor role of p16INK4a and could help explain its specific association with melanoma predisposition. To identify such functions we conducted a yeast-two-hybrid screen for novel p16INK4a binding partners.
Results:
We now report that p16INK4a interacts with the chromatin remodelling factor BRG1. We investigated the cooperative roles of p16INK4a and BRG1 using a panel of cell lines and a melanoma cell model with inducible p16INK4a expression and BRG1 silencing. We found evidence that BRG1 is not required for p16INK4a-induced cell cycle inhibition and propose that the p16INK4a-BRG1 complex regulates BRG1 chromatin remodelling activity. Importantly, we found frequent loss of BRG1 expression in primary and metastatic melanomas, implicating this novel p16INK4a binding partner as an important tumour suppressor in melanoma.
Conclusion:
This data adds to the increasing evidence implicating the SWI/SNF chromatin remodelling complex in tumour development and the association of p16INK4a with chromatin remodelling highlights potentially new functions that may be important in melanoma predisposition and chemoresistance.
Insights
The CDKN2A/p16INK4a gene interacts with BRG1, a chromatin remodeler. Loss of BRG1 in melanoma suggests a new tumor suppressor role for this p16INK4a partner.
Area of Science:
- Molecular Biology
- Oncology
- Cancer Genetics
Background:
- CDKN2A/p16INK4a is a key melanoma susceptibility gene.
- Its primary function involves inhibiting cell cycle progression via pRb phosphorylation.
- Additional roles may explain its link to melanoma predisposition.
Purpose of the Study:
- To identify novel binding partners of p16INK4a.
- To explore additional tumor suppressor functions of p16INK4a beyond cell cycle inhibition.
- To investigate the role of p16INK4a-interacting proteins in melanoma.
Main Methods:
- Yeast-two-hybrid screening to identify p16INK4a binding partners.
- Cell line experiments to study cooperative roles of p16INK4a and BRG1.
- Inducible p16INK4a expression and BRG1 silencing in a melanoma model.
Main Results:
- p16INK4a interacts with the chromatin remodeler BRG1.
- BRG1 is not essential for p16INK4a-mediated cell cycle arrest.
- The p16INK4a-BRG1 complex appears to regulate BRG1's chromatin remodeling activity.
- BRG1 expression is frequently lost in primary and metastatic melanomas.
Conclusions:
- The SWI/SNF chromatin remodeling complex is implicated in tumor development.
- p16INK4a's association with chromatin remodeling suggests novel functions in melanoma.
- These functions may be crucial for melanoma predisposition and chemoresistance.
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