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Updated: Jun 26, 2026

Modeling Ligands into Maps Derived from Electron Cryomicroscopy
Published on: July 19, 2024
Galactose oxidase models: insights from 19F NMR spectroscopy
Fabien Michel1, Sylvain Hamman, Christian Philouze
1Département de Chimie Moléculaire, Chimie Inorganique Redox Biomimétique (CIRE), UMR CNRS 5250, Université J. Fourier, B. P. 53, 38041 Grenoble cedex 9, France.
Abstract:
(19)F labelled tripodal ligands that possess a N(3)O donor set (one phenol, one tertiary amine and either two pyridines or one pyridine and one quinoline) have been synthesized. The fluorine is incorporated either at the phenol O-donor (HL(F) and HL(CF3)) or at the quinoline N-donor (HLq(OMe) and HLq(NO2)). The copper(ii)-phenol complexes (2H)(2+), (1H)(2+), (3H)(2+) and (4H)(2+) as well as the corresponding copper(ii)-phenolate complexes have been characterized. X-Ray diffraction reveals an increase in the oxygen-copper bond distance of more than 0.4 A upon protonation of the phenolate moiety of (4)(+). Protonation is accompanied by an axial to equatorial isomerization of the quinoline group. DFT calculations show that stretching of the Cu-O(phenol) bond, pi-stacking interactions and rotation of the pyridine are key steps in this isomerization process. Protonation, and thus changes in the oxygen-copper bond distance induce either a decrease ((1H)(2+), (2H)(2+)) or an increase ((3H)(2+) and (4H)(2+)) in the copper-fluorine distance that could be monitored by (19)F NMR. In the former case, a broadening of the (19)F NMR signal is observed, whereas a sharpening is observed in the latter case. Temperature dependent (19)F NMR measurements on equimolar mixtures of the phenol and phenolate complexes of (3)(+) and (4)(+) reveal rate constants for proton transfer and/or isomerization of 3000 +/- 100 s(-1) and 2900 +/- 100 s(-1), respectively, at the coalescence temperature. This temperature was found to be strongly affected by the phenol para-substituent as it is 226 K and ca. 330 K for (3)(+) and (4)(+), respectively. A phenoxyl radical species ((3 )(2+)) could be generated and characterized for the first time by (19)F NMR spectroscopy.
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