Related Experiment Video
Updated: Jun 26, 2026

Optimized Negative Staining: a High-throughput Protocol for Examining Small and Asymmetric Protein Structure by Electron Microscopy
Published on: August 15, 2014
Preferential binding of apolipoprotein E derived peptides with oxidized phospholipid
Abhay H Pande1, Rajan K Tripathy
1Department of Biotechnology, National Institute of Pharmaceutical Education and Research, Sector 67, S.A.S. Nagar (Mohali), Punjab 160062, India. apande@niper.ac.in
Apolipoprotein E (apoE) peptide fragments show increased affinity for oxidized phospholipid membranes. This preferential binding suggests a role for apoE in the anti-oxidative properties of cell membranes.
Area of Science:
- Biochemistry
- Molecular Biology
- Lipid Metabolism
Background:
- Apolipoprotein E (apoE) is crucial for lipid transport and metabolism.
- The C-terminal domain of apoE contains high-affinity lipid-binding sites.
- Interactions of apoE with non-oxidized membranes are known, but not with oxidized ones.
Purpose of the Study:
- To investigate the interaction of apoE C-terminal peptide sequences with oxidized phospholipid membranes.
- To compare binding affinity to membranes with and without oxidized phospholipids, specifically 1-palmitoyl-2-azelaoyl-sn-glycero-3-phosphocholine (PazePC).
Main Methods:
- Utilized amphipathic helical peptide sequences from apoE's C-terminal domain.
- Studied peptide interaction with membrane vesicles using fluorescence emission maxima, acrylamide quenching of tryptophan residues, and resonance energy transfer (RET) analysis for binding constants.
Main Results:
- ApoE peptide sequences (202-223, 245-266, 268-289) exhibited higher affinity for PazePC-containing membranes compared to control membranes.
- Binding affinity decreased in the presence of divalent cations (1mM) or NaCl (50mM), indicating potential electrostatic interactions.
- Peptides demonstrated preferential binding to oxidized phospholipid membranes.
Conclusions:
- ApoE C-terminal fragments preferentially bind to membranes containing oxidized phospholipids (PazePC).
- Electrostatic interactions may play a role in the binding mechanism.
- This preferential binding could contribute to the anti-oxidative functions of apolipoprotein E.
Related Concept Videos
Receptor-mediated Endocytosis
Lipid-derived Compounds in the Human Body
Fat-soluble Vitamins
Fat-soluble vitamins, including vitamins A, D, E, and K, are required in minimal quantities, but their deficiencies can lead to severely abnormal physiological conditions. For example, vitamin A deficiency can cause night blindness, dry skin, delayed...
Asymmetric Lipid Bilayer
Lipids as Anchors
The carboxy-terminal of most of the prenylated proteins, such as Ras proteins, contains the...
Pharmacogenetics of Drug Targets: β₂-Adrenergic Receptors, Apo E, Thymidylate Synthase
Factors Affecting Protein-Drug Binding: Drug-Related Factors
One crucial factor in drug-protein binding is the drug's lipophilicity or its affinity for fat. More lipophilic drugs tend to have higher binding extents. For example, highly lipophilic drugs like cloxacillin exhibit substantial protein binding, with as much as 95% of the drug binding to proteins. In contrast,...

