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Updated: Jun 26, 2026

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Micro-CT Imaging and Morphometric Analysis of Mouse Neonatal Brains
Published on: May 19, 2023
Neonatal probabilistic models for brain, CSF and skull using T1-MRI data: preliminary results
K Kazemi1, S Ghadimi, H Abrishami-Moghaddam
1Faculté de Médecine, Université de Picardie Jules Verne, Amiens, France. kamran.kazemi@u-picardie.fr
Summary
A new digital neonatal brain atlas was created for accurate analysis of infant brain images. This atlas accounts for unique neonatal anatomy, improving morphological studies and aiding applications like source localization.
Area of Science:
- Neuroimaging
- Developmental Neuroscience
- Medical Image Analysis
Background:
- Adult and pediatric brain atlases are unsuitable for neonatal neuroimaging due to distinct anatomical features in early development.
- Accurate morphological studies of neonatal brains require specialized atlases that reflect their unique developmental stage.
Purpose of the Study:
- To construct a digital neonatal brain atlas using probabilistic models for brain, cerebrospinal fluid (CSF), and skull.
- To provide a standardized tool for the analysis of neonatal cerebral images.
Main Methods:
- Development of a neonatal brain atlas using images from neonates aged 39-42 weeks.
- Automated segmentation with manual correction, followed by normalization to a stereotaxic neonatal atlas space (GRAMFC_T(39-42)) using Statistical Parametric Mapping (SPM).
- Construction of probabilistic models by averaging resampled brain, CSF, and skull data across subjects.
Main Results:
- A digital probabilistic atlas of the neonatal brain, CSF, and skull was successfully constructed.
- The atlas is based on a cohort of neonates aged 39-42 weeks, capturing specific developmental anatomy.
- The methodology ensures accurate normalization and resampling for structural analysis.
Conclusions:
- The developed neonatal brain atlas is essential for accurate morphological evaluation of infant neuroimaging data.
- This resource facilitates advanced applications such as source localization and detailed neonatal structural image analysis.
- Utilizing this specialized atlas overcomes limitations of using non-neonatal imaging references.
