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Updated: Jun 26, 2026

Screening for Amyloid Aggregation by Semi-Denaturing Detergent-Agarose Gel Electrophoresis
Published on: July 16, 2008
Prion and nonprion amyloids: a comparison inspired by the yeast Sup35 protein
Vitaly V Kushnirov1, Aleksandra B Vishnevskaya, Ilya M Alexandrov
1Institute of Experimental Cardiology, Cardiology Research Center, Moscow, Russia.
Abstract:
Yeast prion determinants are related to polymerization of some proteins into amyloid-like fibers. The [PSI(+)] determinant reflects polymerization of the Sup35 protein. Fragmentation of prion polymers by the Hsp104 chaperone represents a key step of the prion replication cycle. The frequency of fragmentation varies depending on the structure of the prion polymers and defines variation in the prion phenotypes, e.g., the suppressor strength of [PSI(+)] and stability of its inheritance. Besides [PSI(+)], overproduction of Sup35 can produce nonheritable phenotypically silent Sup35 amyloid-like polymers. These polymers are fragmented poorly and are present due to efficient seeding with the Rnq1 prion polymers, which occurs by several orders of magnitude more frequently than seeding of [PSI(+)] appearance. Such Sup35 polymers resemble human nonprion amyloids by their nonheritability, mode of appearance and increased size. Thus, a single protein, Sup35, can model both prion and nonprion amyloids. In yeast, these phenomena are distinguished by the frequency of polymer fragmentation. We argue that in mammals the fragmentation frequency also represents a key factor defining differing properties of prion and nonprion amyloids, including infectivity. By analogy with the Rnq1 seeding of nonheritable Sup35 polymers, the "species barrier" in prion transmission may be due to seeding by heterologous prion of nontransmissible type of amyloid, rather than due to the lack of seeding.
Insights
Yeast Sup35 protein forms amyloid polymers that can be either heritable prions or nonheritable amyloids. Polymer fragmentation frequency, influenced by chaperones like Hsp104, distinguishes these states and may explain prion infectivity.
Area of Science:
- Biochemistry
- Molecular Biology
- Protein Aggregation
Background:
- Prion determinants in yeast, like [PSI(+)], involve protein polymerization into amyloid fibers, exemplified by the Sup35 protein.
- The Hsp104 chaperone's fragmentation of prion polymers is crucial for prion replication and influences phenotypic variation.
- Sup35 can also form nonheritable, poorly fragmented amyloid polymers, distinct from prions.
Purpose of the Study:
- To investigate the role of polymer fragmentation frequency in distinguishing yeast prion and nonprion amyloid states.
- To explore the potential parallels between yeast amyloid formation and human amyloid diseases.
- To propose a model for prion transmission barriers based on amyloid seeding mechanisms.
Main Methods:
- Analysis of Sup35 protein polymerization and fragmentation dynamics in yeast.
- Comparison of [PSI(+)] prion formation with nonheritable Sup35 amyloid formation.
- Investigating the influence of Rnq1 prion polymers on Sup35 amyloid seeding and fragmentation.
Main Results:
- Yeast Sup35 protein can model both heritable prion and nonheritable amyloid formations.
- Polymer fragmentation frequency, mediated by Hsp104, is a key differentiator between prion and nonprion states.
- Nonheritable Sup35 polymers are poorly fragmented and efficiently seeded by Rnq1 polymers.
Conclusions:
- The frequency of amyloid polymer fragmentation is a critical factor distinguishing prion and nonprion amyloids in yeast.
- This fragmentation mechanism may also be key in understanding mammalian prion and nonprion amyloid properties, including infectivity.
- The "species barrier" in prion transmission could be explained by seeding of non-transmissible amyloids by heterologous prions.
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