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Related Concept Videos

Regulation of Expression at Multiple Steps01:23

Regulation of Expression at Multiple Steps

The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the addition of a...
Ribosome Profiling02:24

Ribosome Profiling

Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
Master Transcription Regulators02:23

Master Transcription Regulators

Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a  complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
Master Transcription Regulators02:23

Master Transcription Regulators

Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a  complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
Regulation of the Unfolded Protein Response01:31

Regulation of the Unfolded Protein Response

Inositol-requiring kinase one or IRE1 is the most conserved eukaryotic unfolded protein response (UPR) receptor. It is a type I transmembrane protein kinase receptor with a distinctive site-specific RNase activity. As the binding mechanics of the misfolded proteins with the N-terminal domain of IRE-1 are unclear, three binding models — direct, indirect, and allosteric -- are proposed for receptor activation. Nevertheless, it is known that once a misfolded protein associates with IRE1, it...
Prokaryotic Transcriptional Activators and Repressors01:58

Prokaryotic Transcriptional Activators and Repressors

The organization of prokaryotic genes in their genome is notably different from that of eukaryotes. Prokaryotic genes are organized, such that the genes for proteins involved in the same biochemical process or function are located together in groups. This group of genes, along with their regulatory elements, are collectively known as an operon. The functional genes in an operon are transcribed together to give a single strand of mRNA known as polycistronic mRNA.
Transcription of prokaryotic...

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Related Experiment Video

Updated: Jun 26, 2026

Describing a Transcription Factor Dependent Regulation of the MicroRNA Transcriptome
07:23

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Published on: June 15, 2016

Transcriptomic profiling identifies a PU.1 regulatory network in macrophages.

Karin Weigelt1, Monika Lichtinger, Michael Rehli

  • 1Institute of Human Genetics, University of Regensburg, Franz-Josef-Strauss-Allee 11, 93042 Regensburg, Germany.

Biochemical and Biophysical Research Communications
|January 27, 2009
PubMed
Summary
This summary is machine-generated.

This study reveals the PU.1 transcriptional network, identifying novel target genes crucial for macrophage development. Researchers mapped gene expression and PU.1 binding sites to understand its regulatory role in hematopoiesis.

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Area of Science:

  • Molecular Biology
  • Genomics
  • Immunology

Background:

  • PU.1 is a critical transcription factor regulating hematopoiesis and macrophage differentiation.
  • Previous studies identified PU.1 target genes using chromatin immunoprecipitation.

Purpose of the Study:

  • To complement existing knowledge by performing transcriptomic analysis of PU.1(-/-) progenitors after PU.1 activity restoration.
  • To define a multi-level PU.1 regulatory network in macrophages.

Main Methods:

  • Transcriptomic analysis using Affymetrix exon and genome arrays.
  • Integrated analysis of genome-wide expression data with public microarray datasets.
  • Utilized bibliographic gene connections, binding site prediction, and ChIP-Chip data.

Main Results:

  • Identified novel PU.1 target genes and a comprehensive PU.1 transcriptional network.
  • Discovered an alternative transcript of the PU.1 target gene Ptpro via exon arrays.
  • Demonstrated PU.1 binding to an intronic promoter of Ptpro.

Conclusions:

  • Presents a validated PU.1 transcriptional network with novel target genes.
  • Provides insights into PU.1's regulatory role in macrophage differentiation and hematopoiesis.