Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Control Volume and System Representations01:16

Control Volume and System Representations

Two key frameworks are employed to analyze mass, energy, and momentum transfer: the control volume approach and the system approach. These frameworks offer different perspectives, depending on whether the focus is on a specific region in space (control volume approach) or a defined mass of fluid (system approach).
The control volume approach considers a stationary region in space through which fluid flows. This region is bounded by a control surface.  For instance, in the case of water flowing...
Unsoundness of Aggregate due to Volume Change01:26

Unsoundness of Aggregate due to Volume Change

Unsoundness in aggregates due to volume changes is primarily caused by the physical alterations aggregates undergo, such as freezing and thawing, thermal changes, and wetting and drying. Unsound aggregates, when subjected to these changes, result in volume change upon disintegration. This, in turn, contributes to the deterioration of concrete, including scaling, pop-outs, and cracking. Particular types of aggregates, such as porous flints, cherts, and those containing clay minerals, are...
Imaging Studies VII: Vascular Imaging01:19

Imaging Studies VII: Vascular Imaging

DefinitionRenal angiography, also known as renal arteriography, is an imaging technique used to obtain a comprehensive view of blood flow and the vascular structure of blood vessels in the kidneys and surrounding areas.PurposeRenal angiography detects blood vessel abnormalities in the kidneys, such as aneurysms, stenosis, thrombosis, vascular tumors, and renal artery stenosis. It evaluates kidney function and guides interventional treatments like angioplasty or stent placement.Pre-Procedure...
Imaging Biological Samples with Optical Microscopy01:18

Imaging Biological Samples with Optical Microscopy

Optical microscopy uses optic principles to provide detailed images of samples. Antonie van Leeuwenhoek designed the first compound optical microscope in the 17th century to visualize blood cells, bacteria, and yeast cells. In 1830, Joseph Jackson Lister created an essentially modern light microscope. The 20th century saw the development of microscopes with enhanced magnification and resolution.
In optical microscopy, the specimen to be viewed is placed on a glass slide and clipped on the stage...
Vesicular Tubular Clusters01:45

Vesicular Tubular Clusters

After budding out from the ER membrane, some COPII vesicles lose their coat and fuse with one another to form larger vesicles and interconnected tubules called vesicular tubular clusters or VTCs. These clusters constitute a compartment at the ER-Golgi interface known as ERGIC (Endoplasmic Reticulum Golgi Intermediate Compartment). The ERGIC is a mobile membrane-bound cargo transport system that sorts proteins secreted from ER and delivers them to the Golgi.
With the help of motor proteins such...
Anatomy of the Brain: Ventricles01:18

Anatomy of the Brain: Ventricles

There are hollow fluid-filled cavities known as ventricles deep inside the human brain. There are two lateral ventricles, one in each cerebral hemisphere, and each has three different projections — the anterior, inferior, and posterior horns visible from the lateral side. A thin membrane called the septum pellucidum separates the two lateral ventricles. The slender third ventricle in the diencephalon is connected to each lateral ventricle via a channel called the interventricular foramen. The...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

The genome sequence of <i>Saccopteryx leptura, Schreber, 1774</i> (Chiroptera, Emballonuridae, Saccopteryx).

Wellcome open research·2026
Same author

Modeling 3D mesoscaled neuronal complexity through learning-based dynamic morphometric convolution.

Brain informatics·2026
Same author

AISleep: Automated and interpretable sleep staging from single-channel EEG data.

Patterns (New York, N.Y.)·2025
Same author

Bridging the dimensional gap from planar spatial transcriptomics to 3D cell atlases.

Nature methods·2025
Same author

A mouse brain atlas based on dendritic microenvironments.

Nature neuroscience·2025
Same author

Author Correction: Confocal Airy beam oblique light-sheet tomography for brain-wide cell type distribution and morphology.

Nature methods·2025
Same journal

conMItion: an R package adjusting confounding factors for associations in multi-omics.

Bioinformatics (Oxford, England)·2026
Same journal

SpaMFG: a Spatial Multi-omics Integration Method based on Feature Grouping.

Bioinformatics (Oxford, England)·2026
Same journal

CSCN: Inference of Cell-Specific Causal Networks Using Single-Cell RNA-Seq Data.

Bioinformatics (Oxford, England)·2026
Same journal

Sparse CCA-Based Mediation Analysis with High-Dimensional Exposures and Mediators.

Bioinformatics (Oxford, England)·2026
Same journal

Enhancing Cross-Context Generalization in Drug Perturbation Prediction with a Multimodal Conditional Diffusion Framework.

Bioinformatics (Oxford, England)·2026
Same journal

Primer Design through Submodular Function Estimation.

Bioinformatics (Oxford, England)·2026
See all related articles

Related Experiment Video

Updated: Jun 25, 2026

Volume Segmentation and Analysis of Biological Materials Using SuRVoS (Super-region Volume Segmentation) Workbench
11:38

Volume Segmentation and Analysis of Biological Materials Using SuRVoS (Super-region Volume Segmentation) Workbench

Published on: August 23, 2017

VANO: a volume-object image annotation system.

Hanchuan Peng1, Fuhui Long, Eugene W Myers

  • 1Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, VA, USA. pengh@janelia.hhmi.org

Bioinformatics (Oxford, England)
|February 5, 2009
PubMed
Summary
This summary is machine-generated.

The Volume-Object Annotation System (VANO) is a versatile tool for annotating 3D biological structures like cells and nuclei. It aids in creating detailed digital atlases for research organisms.

More Related Videos

From Voxels to Knowledge: A Practical Guide to the Segmentation of Complex Electron Microscopy 3D-Data
12:08

From Voxels to Knowledge: A Practical Guide to the Segmentation of Complex Electron Microscopy 3D-Data

Published on: August 13, 2014

Using High Resolution Computed Tomography to Visualize the Three Dimensional Structure and Function of Plant Vasculature
11:49

Using High Resolution Computed Tomography to Visualize the Three Dimensional Structure and Function of Plant Vasculature

Published on: April 5, 2013

Related Experiment Videos

Last Updated: Jun 25, 2026

Volume Segmentation and Analysis of Biological Materials Using SuRVoS (Super-region Volume Segmentation) Workbench
11:38

Volume Segmentation and Analysis of Biological Materials Using SuRVoS (Super-region Volume Segmentation) Workbench

Published on: August 23, 2017

From Voxels to Knowledge: A Practical Guide to the Segmentation of Complex Electron Microscopy 3D-Data
12:08

From Voxels to Knowledge: A Practical Guide to the Segmentation of Complex Electron Microscopy 3D-Data

Published on: August 13, 2014

Using High Resolution Computed Tomography to Visualize the Three Dimensional Structure and Function of Plant Vasculature
11:49

Using High Resolution Computed Tomography to Visualize the Three Dimensional Structure and Function of Plant Vasculature

Published on: April 5, 2013

Area of Science:

  • * Biology
  • * Neuroscience
  • * Developmental Biology

Background:

  • * The Volume-Object Annotation System (VANO) is a cross-platform software designed for visualizing and annotating 3D volume objects.
  • * VANO facilitates the detailed examination of cellular and nuclear structures, crucial for biological research.

Purpose of the Study:

  • * To introduce VANO as a tool for 3D image annotation.
  • * To demonstrate VANO's utility in constructing high-resolution digital atlases of biological structures.

Main Methods:

  • * VANO processes initial object collections from segmentation computations.
  • * Users can label, categorize, delete, add, split, merge, and redefine annotated objects within the system.

Main Results:

  • * VANO has been successfully applied to create digital atlases of Caenorhabditis elegans nuclei (L1 stage).
  • * The system was also used for mapping Drosophila melanogaster ventral nerve cord nuclei during late embryonic development.

Conclusions:

  • * VANO provides a convenient and effective platform for 3D volume object annotation.
  • * The system supports the creation of detailed, high-resolution biological atlases for research purposes.