Related Experiment Video
Updated: Jun 25, 2026

14:04
Detection of Protein Aggregation using Fluorescence Correlation Spectroscopy
Published on: April 25, 2021
mRuby, a bright monomeric red fluorescent protein for labeling of subcellular structures
Simone Kredel1, Franz Oswald, Karin Nienhaus
1Institute of General Zoology and Endocrinology, University of Ulm, Ulm, Germany.
Plos One
|February 6, 2009
Summary
mRuby, a bright red fluorescent protein, enables advanced cell imaging. This protein variant also revealed that peroxisomes are inherited in an ordered manner during cell division.
Area of Science:
- Cell Biology
- Biochemistry
- Genetics
Background:
- Red fluorescent proteins (RFPs) are valuable tools in cell biology.
- Engineering RFPs can enhance their properties for specific applications.
- Peroxisome inheritance during cell division is not fully understood.
Purpose of the Study:
- To describe the monomeric red fluorescent protein mRuby, a variant of eqFP611.
- To investigate the role of the C-terminal tail of eqFP611 as a peroxisomal targeting signal (PTS).
- To elucidate the mechanism of peroxisome inheritance during mammalian cell mitosis.
Main Methods:
- Protein engineering of eqFP611 to create mRuby.
- Spectroscopic characterization of mRuby's optical properties.
- Confocal microscopy to visualize peroxisomes during mitosis in mammalian cells.
- Utilizing mRuby fused to PTS to track peroxisome distribution.
Main Results:
- mRuby exhibits bright red fluorescence (excitation/emission 558/605 nm) with a 47 nm Stokes shift, high pH stability, and is ~10x brighter than EGFP in the endoplasmic reticulum.
- The C-terminal tail of eqFP611 functions as a peroxisomal targeting signal (PTS).
- Ordered inheritance of peroxisomes was observed in various mammalian cell types during mitosis, facilitated by clustering around spindle poles, ensuring equal organelle distribution.
Conclusions:
- mRuby is a superior red fluorescent marker for diverse cell biology applications due to its spectral properties and brightness.
- The discovery of ordered peroxisome inheritance provides new insights into organelle biogenesis and cell division.
- Understanding peroxisome biology is crucial, as these organelles are implicated in severe human diseases.
Related Concept Videos
Reporter Genes
Reporter genes are a type of protein-coding gene that are often tagged to a gene of interest. Once inside a target cell, reporter genes usually produce visually identifiable characteristics like fluorescence and luminescence when expressed along with the gene of interest. Thus, reporter genes “report” the presence or absence of genes of interest in an organism, determine the gene expression pattern, or track the physical location of a DNA segment or protein in the cell.
Commonly used reporter...
Commonly used reporter...
Protein Dynamics in Living Cells
Different fluorescence-based techniques are used to study the protein dynamics in living cells. These techniques include FRAP, FRET, and PET.
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...

