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Updated: Jun 25, 2026

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
Gene induction for the treatment of methylmalonic aciduria
Ruimei Hu1, Nicole E Buck, Mahmoud S Khaniani
1Cell and Gene Therapy Group, Murdoch Childrens Research Institute and Department of Paediatrics, University of Melbourne, Royal Children's Hospital, Victoria, Australia.
Background:
Methylmalonic aciduria is an autosomal recessive inborn error of the propionate metabolic pathway. One form of this disorder is caused by mutations in methylmalonyl-coenzyme A mutase (MCM), resulting in reduced levels of enzyme activity. The pharmacological up-regulation of residual mutase activity is one approach to advance treatment strategies for individuals affected by this disorder. We describe the construction, characterization and use of a cellular genomic reporter assay for MCM expression that will potentially identify therapeutic pharmacological agents for methylmalonic aciduria treatment.
Methods:
Homologous recombination was used to insert an enhanced green fluorescent protein (EGFP) cassette inframe before the last codon of exon 13 of the MCM gene (MUT) in a BAC clone. The construct was used to generate stable HeLa cell lines. EGFP expression was measured by flow cytometry and the real-time reverse transcriptase-polymerase chain reaction was used to quantify changes in MUT gene mRNA levels.
Results:
The genomic reporter assay used to screen a selection of compounds. Cisplatin, zidovudine and adefovir were found to increase the levels of MCM mRNA and EGFP expression, providing support for the possible efficacy of these pharmacological compounds in treating methylmalonic aciduria.
Conclusions:
This assay has the potential of being used in high-throughput screening of chemical libraries for the identification of novel compounds that specifically modulate the expression of MCM.
Insights
Researchers developed a reporter assay to find drugs for methylmalonic aciduria. This assay identified cisplatin, zidovudine, and adefovir as compounds that increase methylmalonyl-coenzyme A mutase (MCM) expression, offering potential treatments.
Area of Science:
- Biochemistry
- Genetics
- Pharmacology
Background:
- Methylmalonic aciduria is an inherited metabolic disorder affecting propionate metabolism.
- Mutations in methylmalonyl-coenzyme A mutase (MCM) cause a common form of this disorder, reducing enzyme activity.
- Pharmacological upregulation of residual MCM activity is a potential therapeutic strategy.
Purpose of the Study:
- To construct and characterize a cellular genomic reporter assay for MCM expression.
- To utilize the assay to identify compounds that modulate MCM expression for methylmalonic aciduria treatment.
Main Methods:
- A genomic reporter construct was created using homologous recombination to insert an EGFP cassette into the MCM (MUT) gene in a BAC clone.
- Stable HeLa cell lines were generated from the construct.
- MCM mRNA levels and EGFP expression were quantified using RT-PCR and flow cytometry, respectively.
Main Results:
- The reporter assay was used to screen various compounds.
- Cisplatin, zidovudine, and adefovir were identified as compounds that significantly increased MCM mRNA and EGFP expression.
- These findings support the potential efficacy of these compounds in treating methylmalonic aciduria.
Conclusions:
- The developed assay is effective for identifying compounds that modulate MCM expression.
- This assay has potential for high-throughput screening of chemical libraries.
- Novel compounds specifically targeting MCM expression can be discovered using this screening approach.
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