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Updated: Jun 25, 2026

Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
The structure of CDK4/cyclin D3 has implications for models of CDK activation
T Takaki1, A Echalier, N R Brown
1Cell Cycle Control Laboratory, Clare Hall Laboratories, London Research Institute, Blanche Lane, South Mimms, Herts EN6 3LD, United Kingdom.
Abstract:
Cyclin-dependent kinase 4 (CDK4)/cyclin D complexes are expressed early in the G(1) phase of the cell cycle and stimulate the expression of genes required for G(1) progression by phosphorylation of the product of the retinoblastoma gene, pRb. To elaborate the molecular pathway of CDK4 activation and substrate selection we have determined the structure of nonphosphorylated CDK4/cyclin D3. This structure of an authentic CDK/cyclin complex shows that cyclin binding may not be sufficient to drive the CDK active site toward an active conformation. Phosphorylated CDK4/cyclin D3 is active as a pRb kinase and is susceptible to inhibition by p27(Kip1). Unlike CDK2/cyclin A, CDK4/cyclin D3 can be inactivated by treatment with lambda-phosphatase, implying that phosphorylated T172 is accessible to a generic phosphatase while bound to a cyclin. Taken together, these results suggest that the structural mechanism of CDK4/cyclin D3 activation differs markedly from that of previously studied CDK/cyclin complexes.
Insights
Cyclin-dependent kinase 4 (CDK4)/cyclin D3 activation requires more than just cyclin binding, differing from other CDK/cyclin complexes. Phosphorylation at T172 is crucial for CDK4/cyclin D3 kinase activity and regulation.
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- Cyclin-dependent kinase 4 (CDK4)/cyclin D complexes regulate the G(1) phase of the cell cycle.
- CDK4 phosphorylates the retinoblastoma gene product (pRb), promoting G(1) progression.
Purpose of the Study:
- To elucidate the molecular pathway of CDK4 activation.
- To understand CDK4 substrate selection.
- To determine the structure of nonphosphorylated CDK4/cyclin D3.
Main Methods:
- X-ray crystallography to determine the structure of nonphosphorylated CDK4/cyclin D3.
- Biochemical assays to assess kinase activity and regulation.
Main Results:
- The structure of nonphosphorylated CDK4/cyclin D3 reveals that cyclin binding alone does not fully activate the CDK active site.
- Phosphorylated CDK4/cyclin D3 exhibits pRb kinase activity and is inhibited by p27(Kip1).
- CDK4/cyclin D3, unlike CDK2/cyclin A, can be inactivated by lambda-phosphatase, indicating T172 phosphorylation accessibility.
Conclusions:
- CDK4/cyclin D3 activation mechanism differs significantly from other known CDK/cyclin complexes.
- Phosphorylation at T172 is essential for CDK4/cyclin D3 activity and regulation by phosphatases.
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