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Updated: Jun 25, 2026

De novo Identification of Actively Translated Open Reading Frames with Ribosome Profiling Data
Published on: February 18, 2022
[Decoding errors--function of the ribosomal E site]
Kamilla Bakowska-Zywicka1, Marta Sikora, Tomasz Twardowski
1Instytut Chemii Bioorganicznej PAN, Poznań. bakowska@ibch.poznan.pl
Abstract:
In the sixties of the last (20th) century James Watson presented a two-sites model for the ribosome comprising the P site for the peptidyl transfer RNA (tRNA) before peptide-bond formation and the A site, where decoding takes place according to the codon exposed there. Twenty years later the E site, which was specific for deacylated tRNA was detected. However, despite having three tRNA binding sites, only two tRNAs occupy the ribosome simultanously during protein synthesis: at the A and P sites before translocation (PRE state) and at the P and E sites after translocation (POST state). The importance of having two tRNAs in the POST state has been revealed during the last 25 years. It has been shown, that the E-tRNA prevents misincorporation of aminoacids and loss of reading frame. In other words, the ribosomal E site is a guard for accuracy of the polypeptide synthesized in the ribosomes.
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