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Updated: Jun 24, 2026

The Importance of Correct Protein Concentration for Kinetics and Affinity Determination in Structure-function Analysis
Published on: March 17, 2010
A single mutation induces molten globule formation and a drastic destabilization of wild-type cytochrome c at pH 6.0
Md Khurshid Alam Khan1, Utpal Das, Md Hamidur Rahaman
1Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi, India.
Insights
The L94G mutant of horse cytochrome c exhibits molten globule characteristics. This mutation significantly reduces protein stability, impacting its common folding nucleus and overall structure.
Area of Science:
- Biochemistry
- Structural Biology
- Protein Science
Background:
- Cytochromes c possess conserved residues crucial for structure and function.
- Four key positions, beyond heme binding, are conserved across seven subfamilies.
- These conserved residues are implicated in forming a common protein folding nucleus.
Purpose of the Study:
- To investigate the role of the conserved Leu94 residue in cytochrome c structure and stability.
- To characterize the structural and stability changes induced by mutating Leu94 to Glycine (L94G).
Main Methods:
- Circular dichroism spectroscopy (far-UV, near-UV, Soret).
- Fluorescence spectroscopy (intrinsic and 1-Anilino-8-naphthalene sulfonate).
- Dynamic light scattering.
- Thermal denaturation studies.
- Analysis of Protein Data Bank (PDB) coordinates.
Main Results:
- The L94G mutant displays molten globule characteristics at pH 6.0.
- NaCl induces a transition to a pre-molten globule state in the L94G mutant at pH 2.
- The L94G mutant shows a 28°C lower denaturation midpoint compared to wild-type horse cytochrome c.
- Structural analysis suggests reduced stability for the L94G mutant.
Conclusions:
- The Leu94 residue is critical for maintaining the native structure and stability of cytochrome c.
- The L94G mutation destabilizes the protein, leading to molten globule and pre-molten globule states.
- Conserved residues play a vital role in the protein folding nucleus and overall structural integrity.
Abstract:
Amino acid sequences of seven subfamilies of cytochromes c show that other than heme binding residues there are only four positions which are conserved in all subfamilies: Gly/Ala6, Phe/Tyr10, Leu/Val/Phe94, and Tyr/Trp/Phe97. These residues are 90% conserved in all sequences reported and are also considered to be involved in a common folding nucleus. To determine the importance of conserved interactions offered by the side chain of Leu94, we made an L94G mutant of horse cytochrome c. Characterization of this mutant by the far-UV, near-UV, and Soret circular dichroism, intrinsic and 1-Anilino-8-naphthalene sulfonate fluorescence, and dynamic light scattering measurements led to the conclusion that the L94G mutant has all the common structural characteristics of a molten globule at pH 6.0 and 25 degrees C. NaCl induces a cooperative transition between the acid-denatured state and a state of L94G having all the common structural characteristics of a pre-molten-globule state at pH 2 and 25 degrees C. Thermal denaturation studies showed that the midpoint of denaturation of the mutant is 28 degrees C less than that of the wild-type protein. Interestingly, the structure analysis using the coordinates given in the Protein Data Bank (1hrc) also suggested that the L94G mutant would be less stable than the wild-type protein.
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