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Sequential Salt Extractions for the Analysis of Bulk Chromatin Binding Properties of Chromatin Modifying Complexes
Published on: October 2, 2017
Studies on the binding affinity of anticancer drug mitoxantrone to chromatin, DNA and histone proteins
Zahra Hajihassan1, Azra Rabbani-Chadegani
1Department of Biochemistry, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran. Hajihassan@ibb.ut.ac.ir
Abstract:
Mitoxantrone is a potent antitumor drug, widely used in the treatment of various cancers. In the present study, we have investigated and compared the affinity of anticancer drug, mitoxantrone, to EDTA-soluble chromatin (SE-chromatin), DNA and histones employing UV/Vis, fluorescence, CD spectroscopy, gel electrophoresis and equilibrium dialysis techniques. The results showed that the interaction of mitoxantrone with SE-chromatin proceeds into compaction/aggregation as revealed by reduction in the absorbencies at 608 and 260 nm (hypochromicity) and disappearance of both histones and DNA on the gels. Mitoxantrone interacts strongly with histone proteins in solution making structural changes in the molecule as shown by CD and fluorescence analysis. The binding isotherms demonstrate a positive cooperative binding pattern for the chromatin- mitoxantrone interaction. It is suggested higher binding affinity of mitoxantrone to chromatin compared to DNA implying that the histone proteins may play an important role in the chromatin- mitoxantrone interaction process.
Insights
This study reveals that the anticancer drug mitoxantrone binds more strongly to chromatin than DNA. Histone proteins appear crucial for this enhanced binding of mitoxantrone to chromatin.
Area of Science:
- Biochemistry
- Molecular Biology
- Pharmacology
Background:
- Mitoxantrone is a key chemotherapy agent for various cancers.
- Understanding its interaction with cellular components like chromatin is vital for optimizing cancer therapy.
Purpose of the Study:
- To compare the binding affinity of mitoxantrone to EDTA-soluble chromatin (SE-chromatin), DNA, and histones.
- To elucidate the role of histone proteins in mitoxantrone-chromatin interactions.
Main Methods:
- UV/Vis spectroscopy
- Fluorescence spectroscopy
- Circular Dichroism (CD) spectroscopy
- Gel electrophoresis
- Equilibrium dialysis
Main Results:
- Mitoxantrone induces compaction and aggregation of SE-chromatin, evidenced by hypochromicity and loss of DNA/histones on gels.
- Strong interaction between mitoxantrone and histone proteins, causing structural changes.
- Positive cooperative binding observed between mitoxantrone and chromatin.
Conclusions:
- Mitoxantrone exhibits higher binding affinity for chromatin than for DNA.
- Histone proteins likely play a significant role in mediating the interaction between mitoxantrone and chromatin.
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