Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Electron Behavior00:54

Electron Behavior

Electrons are negatively charged subatomic particles that are attracted to an orbit around the positively-charged nucleus of an atom. They reside in locations that are associated with energy levels called shells and are further organized into sub-shells and orbitals within each shell.Electrons Orbit the NucleusElectrons are found in specific locations outside of the nucleus. The shell in which an electron resides indicates the general energy level of the electron: those closer to the nucleus...
Electron Orbital Model01:18

Electron Orbital Model

Orbitals are the areas outside of the atomic nucleus where electrons are most likely to reside. They are characterized by different energy levels, shapes, and three-dimensional orientations. The location of electrons is described most generally by a shell or principal energy level, then by a subshell within each shell, and finally, by individual orbitals found within the subshells.The first shell is closest to the nucleus, and it has only one subshell with a single spherical orbital called the...
π Electron Effects on Chemical Shift: Overview01:27

π Electron Effects on Chemical Shift: Overview

An applied magnetic field causes loosely bound π-electrons in organic molecules to circulate, producing a local or induced diamagnetic field over a large spatial volume. As the molecules tumble in solution, the field generated by π-electrons in spherical substituents results in a zero net field. However, the net field generated by π-electrons in non-spherical substituents is not zero. The effect of this induced field depends on the orientation of the molecule with respect to B0, resulting in...
Molecular Orbital Theory II03:51

Molecular Orbital Theory II

Molecular Orbital Energy Diagrams
Molecular Orbital Theory I02:35

Molecular Orbital Theory I

Overview of Molecular Orbital Theory
Electronic Structure of Atoms02:28

Electronic Structure of Atoms


An atom comprises protons and neutrons, which are contained inside the dense, central core called the nucleus, with electrons present around the nucleus. Taking into account the wave–particle duality of electrons and the uncertainty in position around the nucleus, quantum mechanics provides a more accurate model for the atomic structure. It describes atomic orbitals as the regions around the nucleus where electrons of discrete energy exist, characterized by four quantum numbers:  n, l, ml, and...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Nanoplastics Can Build Themselves.

The journal of physical chemistry letters·2026
Same author

Good Practices for Simulation Studies Published in <i>The Journal of Physical Chemistry B</i>.

The journal of physical chemistry. B·2026
Same author

CONAN Build: Building Functionalized or Doped Carbon Nanomaterials.

Journal of chemical information and modeling·2026
Same author

Uncertainty Quantification for <i>In Silico</i> Chemistry.

Chemical reviews·2026
Same author

Solvation structures of potassium bis(trifluoromethylsulfonyl)imide-glyme highly concentrated electrolytes and cycling on organic cathodes.

Dalton transactions (Cambridge, England : 2003)·2026
Same author

A multifidelity Monte Carlo approach for simulating the diffusion coefficient of water. I. Forward problem.

The Journal of chemical physics·2026
Same journal

Anharmonic phonons via quantum thermal bath simulations.

The Journal of chemical physics·2026
Same journal

Quantum simulation of alignment dependent differential cross sections in co-propagating molecular beams at cold collision energies.

The Journal of chemical physics·2026
Same journal

Non-additive ion effects on the coil-globule equilibrium of a generic polymer in aqueous salt solutions.

The Journal of chemical physics·2026
Same journal

Insights into the unexpected small reduction of the temperature of maximum density of water by lithium chloride addition.

The Journal of chemical physics·2026
Same journal

Optical frequency comb double-resonance spectroscopy of the 9030-9175 cm-1 states of ethylene.

The Journal of chemical physics·2026
Same journal

Time reversal breaking of colloidal particles in cells.

The Journal of chemical physics·2026
See all related articles

Related Experiment Video

Updated: Jun 24, 2026

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package
06:37

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package

Published on: September 17, 2021

Relativistic all-electron molecular dynamics simulations.

Jens Thar1, Barbara Kirchner

  • 1Lehrstuhl für Theoretische Chemie, Wilhelm-Ostwald Institut für Physikalische und Theoretische Chemie, Universität Leipzig, Linnestr.2, D-04103 Leipzig, Germany.

The Journal of Chemical Physics
|April 2, 2009
PubMed
Summary
This summary is machine-generated.

The Douglas-Kroll-Hess relativistic method is now integrated into CP2K for molecular dynamics. This enables accurate simulations, revealing relativistic effects like larger motion amplitudes and distances in hydrogen halide dimers.

More Related Videos

Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid
08:54

Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid

Published on: January 25, 2020

Realistic Membrane Modeling Using Complex Lipid Mixtures in Simulation Studies
07:31

Realistic Membrane Modeling Using Complex Lipid Mixtures in Simulation Studies

Published on: September 1, 2023

Related Experiment Videos

Last Updated: Jun 24, 2026

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package
06:37

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package

Published on: September 17, 2021

Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid
08:54

Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid

Published on: January 25, 2020

Realistic Membrane Modeling Using Complex Lipid Mixtures in Simulation Studies
07:31

Realistic Membrane Modeling Using Complex Lipid Mixtures in Simulation Studies

Published on: September 1, 2023

Area of Science:

  • Computational Chemistry
  • Quantum Chemistry
  • Molecular Dynamics

Background:

  • Relativistic effects are crucial for accurate molecular simulations, especially for heavier elements.
  • Implementing relativistic methods in molecular dynamics (MD) is computationally demanding.
  • Existing MD packages often lack robust relativistic treatment.

Purpose of the Study:

  • To implement the scalar-relativistic Douglas-Kroll-Hess (DKH) method within the CP2K simulation package.
  • To validate the accuracy of relativistic gradients and molecular geometries.
  • To investigate relativistic effects on the dynamics of hydrogen halide dimers.

Main Methods:

  • Integration of the DKH method into the Born-Oppenheimer molecular dynamics framework of CP2K.
  • Utilizing relativistic densities with a nonrelativistic gradient routine as a valid approximation.
  • Performing first-principles molecular dynamics simulations on hydrogen halide dimers (HX)2, where X = F, Cl, Br, I.
  • Evaluation of various electronic localization schemes.

Main Results:

  • The DKH implementation shows excellent agreement with numerical gradients, with structural errors below 0.02 pm.
  • Relativistic simulations of (HX)2 dimers reveal observable effects: increased amplitude of motion, decreased frequency, and elongated bond distances.
  • Localization schemes exhibit small errors for equilibrium geometries but larger errors for compressed configurations.

Conclusions:

  • The scalar-relativistic DKH method is successfully implemented in CP2K for Born-Oppenheimer molecular dynamics.
  • The approximation of using relativistic densities in nonrelativistic gradients is validated.
  • Relativistic effects significantly influence molecular dynamics, particularly for systems with heavier halogens.