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Updated: Jun 24, 2026

Real-time Observation of the DNA Strand Exchange Reaction Mediated by Rad51
Published on: February 13, 2019
DIDS, a chemical compound that inhibits RAD51-mediated homologous pairing and strand exchange
Takako Ishida1, Yoshimasa Takizawa, Takashi Kainuma
1Laboratory of Structural Biology, Graduate School of Advanced Science and Engineering, Waseda University, 2-2 Wakamatsu-cho, Shinjuku-ku, Tokyo 162-8480, Japan.
Abstract:
RAD51, an essential eukaryotic DNA recombinase, promotes homologous pairing and strand exchange during homologous recombination and the recombinational repair of double strand breaks. Mutations that up- or down-regulate RAD51 gene expression have been identified in several tumors, suggesting that inappropriate expression of the RAD51 activity may cause tumorigenesis. To identify chemical compounds that affect the RAD51 activity, in the present study, we performed the RAD51-mediated strand exchange assay in the presence of 185 chemical compounds. We found that 4,4'-diisothiocyanostilbene-2,2'-disulfonic acid (DIDS) efficiently inhibited the RAD51-mediated strand exchange. DIDS also inhibited the RAD51-mediated homologous pairing in the absence of RPA. A surface plasmon resonance analysis revealed that DIDS directly binds to RAD51. A gel mobility shift assay showed that DIDS significantly inhibited the DNA-binding activity of RAD51. Therefore, DIDS may bind near the DNA binding site(s) of RAD51 and compete with DNA for RAD51 binding.
Insights
4,4'-diisothiocyanostilbene-2,2'-disulfonic acid (DIDS) inhibits RAD51, a key protein in DNA repair and homologous recombination. This compound may disrupt cancer development by interfering with RAD51's DNA binding activity.
Area of Science:
- Molecular Biology
- Biochemistry
- Genetics
Background:
- RAD51 is a crucial eukaryotic DNA recombinase involved in homologous recombination and DNA double-strand break repair.
- Aberrant RAD51 gene expression is linked to tumorigenesis, highlighting its importance in cancer development.
Purpose of the Study:
- To screen for chemical compounds that modulate RAD51 activity.
- To investigate the inhibitory effects of identified compounds on RAD51-mediated DNA strand exchange and homologous pairing.
Main Methods:
- RAD51-mediated strand exchange assay with 185 chemical compounds.
- Surface plasmon resonance (SPR) analysis to detect direct binding.
- Gel mobility shift assay to assess DNA-binding activity.
Main Results:
- 4,4 -diisothiocyanostilbene-2,2 -disulfonic acid (DIDS) was identified as a potent inhibitor of RAD51-mediated strand exchange and homologous pairing.
- SPR confirmed direct binding of DIDS to RAD51.
- DIDS significantly inhibited RAD51's DNA-binding activity.
Conclusions:
- DIDS effectively inhibits RAD51's strand exchange and homologous pairing functions.
- DIDS likely binds to RAD51 near its DNA-binding site, competing with DNA.
- DIDS represents a potential therapeutic lead for targeting RAD51 in cancer treatment.
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