Related Experiment Video
Updated: Jun 24, 2026

Investigation of the Transcriptional Role of a RUNX1 Intronic Silencer by CRISPR/Cas9 Ribonucleoprotein in Acute Myeloid Leukemia Cells
Published on: September 1, 2019
Regulation of RUNX3 tumor suppressor gene expression in cutaneous melanoma
Minoru Kitago1, Steve R Martinez, Takeshi Nakamura
1Department of Molecular Oncology, John Wayne Cancer Institute at Saint John's Health Center, Santa Monica, California, USA.
Purpose:
RUNX3 is a known tumor suppressor gene in several carcinomas. Aberration in RUNX3 expression has not been described for cutaneous melanoma. Therefore, we assessed the expression of RUNX3 in cutaneous melanoma and its regulatory mechanisms relative to tumor progression.
Experimental Design:
The expression of RUNX3 mRNA and miR-532-5p (microRNA) was assessed in melanoma lines and in primary and metastatic melanoma tumors.
Results:
RUNX3 mRNA expression was down-regulated in 11 of 11 (100%) metastatic melanoma lines relative to normal melanocytes (P < 0.001). Among 123 primary and metastatic melanoma tumors and 12 normal skin samples, RUNX3 expression was significantly down-regulated in primary melanomas (n = 82; P = 0.02) and in melanoma metastasis (n = 41; P < 0.0001) versus normal skin (n = 12). This suggested that RUNX3 down-regulation may play a role in the development and progression of melanoma. RUNX3 promoter region hypermethylation was assessed as a possible regulator of RUNX3 expression using methylation-specific PCR. Assessment of RUNX3 promoter region methylation showed that only 5 of 17 (29%) melanoma lines, 2 of 52 (4%) primary melanomas, and 5 of 30 (17%) metastatic melanomas had hypermethylation of the promoter region. A microRNA (miR-532-5p) was identified as a target of RUNX3 mRNA sequences. miR-532-5p expression was shown to be significantly up-regulated in melanoma lines and metastatic melanoma tumors relative to normal melanocytes and primary melanomas, respectively. To investigate the relation between RUNX3 and miR-532-5p, anti-miR-532-5p was transfected into melanoma lines. Inhibition of miR-532-5p up-regulated both RUNX3 mRNA and protein expression.
Conclusions:
RUNX3 is down-regulated during melanoma progression and miR-532-5p is a regulatory factor of RUNX3 expression.
Insights
RUNX3, a tumor suppressor, is downregulated in melanoma progression. MicroRNA miR-532-5p regulates RUNX3 expression, offering potential therapeutic targets for cutaneous melanoma.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- RUNX3 is a recognized tumor suppressor gene in various carcinomas.
- Its role in cutaneous melanoma has not been previously described.
Purpose of the Study:
- To investigate RUNX3 expression in cutaneous melanoma.
- To identify regulatory mechanisms of RUNX3 expression in melanoma progression.
Main Methods:
- Assessed RUNX3 mRNA and miR-532-5p expression in melanoma cell lines and patient tumors.
- Utilized methylation-specific PCR to evaluate RUNX3 promoter hypermethylation.
- Investigated the regulatory relationship between RUNX3 and miR-532-5p via transfection experiments.
Main Results:
- RUNX3 mRNA expression was significantly downregulated in melanoma cell lines and tumors compared to normal melanocytes and skin.
- RUNX3 promoter hypermethylation was infrequent, suggesting other regulatory mechanisms.
- miR-532-5p was upregulated in melanoma and directly inversely correlated with RUNX3 expression.
- Inhibiting miR-532-5p restored RUNX3 mRNA and protein levels.
Conclusions:
- RUNX3 expression is decreased during melanoma progression.
- miR-532-5p acts as a key regulator of RUNX3 expression in melanoma.
More Related Videos
Related Concept Videos
The Retinoblastoma Gene
The first-ever tumor suppressor gene called Rb was identified in retinoblastoma - a rare eye tumor in children. In inherited forms of the disease, a child inherits one defective copy of the Rb gene, which predisposes them to retinoblastoma. However,...
Abnormal Proliferation
Loss of Tumor Suppressor Gene Functions
When the tumor suppressor genes develop mutations or are lost, cells start growing out of control, leading to cancer. However, a single functional copy of the tumor suppressor gene is enough for the cells to maintain their normal functions and cell...
Epigenetic Regulation
Epigenetic Regulation
X-chromosome...
Negative Regulator Molecules

