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Updated: Jun 24, 2026

High Sensitivity Measurement of Transcription Factor-DNA Binding Affinities by Competitive Titration Using Fluorescence Microscopy
Published on: February 7, 2019
A DNA sequence directed mutual transcription regulation of HSF1 and NFIX involves novel heat sensitive protein
Umashankar Singh1, Erik Bongcam-Rudloff, Bengt Westermark
1Department of Genetics and Pathology, Uppsala University, Uppsala, Sweden. umashankar.singh@genpat.uu.se
Background:
Though the Nuclear factor 1 family member NFIX has been strongly implicated in PDGFB-induced glioblastoma, its molecular mechanisms of action remain unknown. HSF1, a heat shock-related transcription factor is also a powerful modifier of carcinogenesis by several factors, including PDGFB. How HSF1 transcription is controlled has remained largely elusive.
Methodology/Principal Findings:
By combining microarray expression profiling and a yeast-two-hybrid screen, we identified that NFIX and its interactions with CGGBP1 and HMGN1 regulate expression of HSF1. We found that CGGBP1 organizes a bifunctional transcriptional complex at small CGG repeats in the HSF1 promoter. Under chronic heat shock, NFIX uses CGGBP1 and HMGN1 to get recruited to this promoter and in turn affects their binding to DNA. Results show that the interactions of NFIX with CGGBP1 and HMGN1 in the soluble fraction are heat shock sensitive due to preferential localization of CGGBP1 to heterochromatin after heat shock. HSF1 in turn was found to bind to the NFIX promoter and repress its expression in a heat shock sensitive manner.
Conclusions/Significance:
NFIX and HSF1 exert a mutual transcriptional repressive effect on each other which requires CGG repeat in HSF1 promoter and HSF1 binding site in NFIX promoter. We unravel a unique mechanism of heat shock sensitive DNA sequence-directed reciprocal transcriptional regulation between NFIX and HSF1. Our findings provide new insights into mechanisms of transcription regulation under stress.
Insights
Nuclear factor 1 (NFIX) and heat shock factor 1 (HSF1) mutually regulate each other's transcription. This interaction is heat shock sensitive and involves specific DNA sequences, offering new insights into stress-induced gene regulation.
Area of Science:
- Molecular Biology
- Gene Regulation
- Cancer Biology
Background:
- Nuclear factor 1 (NFIX) is implicated in PDGFB-induced glioblastoma, but its mechanisms are unknown.
- Heat shock factor 1 (HSF1) influences carcinogenesis, yet its transcriptional control remains elusive.
Purpose of the Study:
- To elucidate the molecular mechanisms regulating HSF1 transcription.
- To investigate the interplay between NFIX and HSF1 in gene regulation.
Main Methods:
- Microarray expression profiling
- Yeast-two-hybrid screening
- Analysis of protein-DNA interactions and subcellular localization.
Main Results:
- NFIX, CGGBP1, and HMGN1 interaction regulates HSF1 expression via CGG repeats in the HSF1 promoter.
- Heat shock induces NFIX recruitment to the HSF1 promoter, altering DNA binding.
- HSF1 represses NFIX expression through its promoter in a heat shock-sensitive manner.
Conclusions:
- NFIX and HSF1 exhibit reciprocal transcriptional repression dependent on promoter-specific DNA sequences.
- A novel mechanism of heat shock-sensitive, DNA sequence-directed transcriptional regulation between NFIX and HSF1 is identified.
- Findings provide new insights into transcriptional regulation under cellular stress conditions.
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