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Related Concept Videos

Protein Folding01:25

Protein Folding

Proteins are chains of amino acids linked together by peptide bonds. Upon synthesis, a protein folds into a three-dimensional conformation, critical to its biological function. Interactions between its constituent amino acids guide protein folding, and hence the protein structure is primarily dependent on its amino acid sequence.
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
Protein Folding01:22

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Protein Folding01:22

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Amyloid Fibrils03:03

Amyloid Fibrils

Amyloid fibrils are aggregates of misfolded proteins.  Under most circumstances, misfolded proteins are either refolded by chaperone proteins or degraded by the proteasome. However, in the case of a mutation or a disease, these proteins can accumulate to form large clusters and often further assemble to form elongated fibers, called fibrils. 
Amyloid deposits were observed as early as 1639 in the liver and the spleen.   In 1854, Rudolph Virchow performed iodine staining, normally used to...
Amyloid Fibrils03:03

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Amyloid fibrils are aggregates of misfolded proteins.  Under most circumstances, misfolded proteins are either refolded by chaperone proteins or degraded by the proteasome. However, in the case of a mutation or a disease, these proteins can accumulate to form large clusters and often further assemble to form elongated fibers, called fibrils. 
Amyloid deposits were observed as early as 1639 in the liver and the spleen.   In 1854, Rudolph Virchow performed iodine staining, normally used to...
Protein Organization01:13

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Characterization of pH-Dependent Reversible Self-Assembly of Amyloid Beta 1-40-Coated Gold Colloids
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Effect of beta-sheet propensity on peptide aggregation.

Giovanni Bellesia1, Joan-Emma Shea

  • 1Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, USA. gbellesia@chem.ucsb.edu

The Journal of Chemical Physics
|April 17, 2009
PubMed
Summary

Peptide flexibility influences aggregate structure. Lowering beta-sheet propensity in peptides can reduce fibril formation and promote toxic oligomers implicated in amyloid diseases.

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Last Updated: Jun 24, 2026

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Formation of Ordered Biomolecular Structures by the Self-assembly of Short Peptides

Published on: November 21, 2013

Area of Science:

  • Biophysics
  • Computational Biology
  • Materials Science

Background:

  • Beta-sheet aggregates are central to amyloid diseases.
  • Understanding peptide self-assembly is crucial for disease research.

Purpose of the Study:

  • Investigate how beta-sheet propensity affects peptide aggregate structures.
  • Explore the relationship between peptide flexibility and supramolecular assembly.

Main Methods:

  • Utilized an off-lattice coarse-grained peptide model.
  • Generated a phase diagram based on temperature and beta-sheet propensity.

Main Results:

  • High beta-sheet propensity favors fibrillar structures.
  • Reduced beta-sheet propensity leads to diverse structures: fibrils, beta-barrels, and amorphous aggregates.
  • Simulations suggest decreased beta-sheet propensity favors toxic oligomer formation.

Conclusions:

  • Peptide beta-sheet propensity is a key determinant of aggregate morphology.
  • Findings offer insights into the structural basis of amyloid diseases.
  • Parallels exist between beta-sheet aggregates and nematic liquid crystals.