Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Video

Updated: Jun 24, 2026

Informatic Analysis of Sequence Data from Batch Yeast 2-Hybrid Screens
09:14

Informatic Analysis of Sequence Data from Batch Yeast 2-Hybrid Screens

Published on: June 28, 2018

MapView: visualization of short reads alignment on a desktop computer.

Hua Bao1, Hui Guo, Jinwei Wang

  • 1State Key Laboratory of Biocontrol and Key Laboratory of Gene Engineering of Ministry of Education, School of Life Sciences, Sun Yat-Sen University, Guangzhou, China. baohua100@hotmail.com

Bioinformatics (Oxford, England)
|April 17, 2009
PubMed
Summary

MapView is a new visual analytics tool for analyzing large-scale short reads alignment data and genetic variations. It efficiently processes millions of reads on standard computers, aiding genetic variation detection.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Pan-cancer analysis of tissue-plasma genomic concordance reveals enhanced concordance with liver metastasis and plasma clonality as predictor of poorer overall survival.

NPJ precision oncology·2026
Same author

Toward generalizable prediction of cancer signal using a cell-free DNA language model.

Cell reports. Medicine·2026
Same author

Noninvasive detection and prognostic stratification of biliary tract cancer using cell-free DNA fragmentomics: a model development and validation study.

Molecular biomedicine·2026
Same author

A machine learning framework combining cfDNA fragmentomics and serum biomarkers for early ovarian cancer detection.

Cell communication and signaling : CCS·2026
Same author

Integrative fragmentomic and mutational signature profile of plasma cfDNA for early lung cancer detection.

NPJ precision oncology·2026
Same author

Accurate broadband wavefront sensing for space telescopes via a compact neural network.

Applied optics·2026

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Genomics

Background:

  • Analyzing large-scale sequencing data presents computational challenges.
  • Existing tools may struggle with memory and processing large datasets.

Purpose of the Study:

  • To introduce MapView, a novel visual analytics tool.
  • To facilitate the representation and analysis of short reads alignment data.
  • To enable automated genetic variation detection.

Main Methods:

  • MapView utilizes a compact alignment view for single-end and paired-end reads.
  • Supports multiple navigation and zoom functionalities.
  • Employs multi-thread processing for efficiency.

Main Results:

More Related Videos

An Integrated Approach for Microprotein Identification and Sequence Analysis
09:37

An Integrated Approach for Microprotein Identification and Sequence Analysis

Published on: July 12, 2022

Mapping Mammalian 3D Genome Interactions with Micro-C-XL
11:41

Mapping Mammalian 3D Genome Interactions with Micro-C-XL

Published on: November 3, 2023

Related Experiment Videos

Last Updated: Jun 24, 2026

Informatic Analysis of Sequence Data from Batch Yeast 2-Hybrid Screens
09:14

Informatic Analysis of Sequence Data from Batch Yeast 2-Hybrid Screens

Published on: June 28, 2018

An Integrated Approach for Microprotein Identification and Sequence Analysis
09:37

An Integrated Approach for Microprotein Identification and Sequence Analysis

Published on: July 12, 2022

Mapping Mammalian 3D Genome Interactions with Micro-C-XL
11:41

Mapping Mammalian 3D Genome Interactions with Micro-C-XL

Published on: November 3, 2023

  • MapView efficiently handles hundreds of millions of short reads on a desktop computer.
  • Provides automated genetic variation detection capabilities.
  • Successfully adopted by over 10 research labs worldwide.

Conclusions:

  • MapView is an effective tool for visualizing and analyzing large-scale short reads alignment data.
  • It simplifies genetic variation analysis with automated detection.
  • Its performance and usability make it valuable for genomic research.