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Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation
Published on: June 21, 2016
TRABAS: a database for transcription regulation by ABA signaling
Ananyo Choudhury1, Ansuman Lahiri
1Department of Biophysics, Molecular Biology & Bioinformatics, University of Calcutta, 92, APC Road, Kolkata 700009, India. ananyo.c@gmail.com
Abstract:
The effects of abscisic acid (ABA) induction on Arabidopsis thaliana transcriptome have been investigated by various expression studies. We have assembled and analyzed data from available expression studies related to ABA signaling in Arabidopsis along with other available microarray data, functional annotations and information related to occurrence of cis-regulatory elements in promoters of Arabidopsis genes in a database called TRABAS. TRABAS is expected to provide a simple, user-friendly platform to facilitate the study of different aspects of ABA mediated transcription regulation and is freely available at http://www.bioinformatics.org/trabas/.
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