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Updated: Jun 23, 2026

Following the Dynamics of Structural Variants in Experimentally Evolved Populations
Published on: February 3, 2023
Occurrence, plasticity, and evolution of the vpma gene family, a genetic system devoted to high-frequency surface
Laurent-Xavier Nouvel1, Marc Marenda, Pascal Sirand-Pugnet
1Université de Toulouse, ENVT, UMR 1225, F-31076 Toulouse, France.
Abstract:
Mycoplasma agalactiae, an important pathogen of small ruminants, exhibits a very versatile surface architecture by switching multiple, related lipoproteins (Vpmas) on and off. In the type strain, PG2, Vpma phase variation is generated by a cluster of six vpma genes that undergo frequent DNA rearrangements via site-specific recombination. To further comprehend the degree of diversity that can be generated at the M. agalactiae surface, the vpma gene repertoire of a field strain, 5632, was analyzed and shown to contain an extended repertoire of 23 vpma genes distributed between two loci located 250 kbp apart. Loci I and II include 16 and 7 vpma genes, respectively, with all vpma genes of locus II being duplicated at locus I. Several Vpmas displayed a chimeric structure suggestive of homologous recombination, and a global proteomic analysis further indicated that at least 13 of the 16 Vpmas can be expressed by the 5632 strain. Because a single promoter is present in each vpma locus, concomitant Vpma expression can occur in a strain with duplicated loci. Consequently, the number of possible surface combinations is much higher for strain 5632 than for the type strain. Finally, our data suggested that insertion sequences are likely to be involved in 5632 vpma locus duplication at a remote chromosomal position. The role of such mobile genetic elements in chromosomal shuffling of genes encoding major surface components may have important evolutionary and epidemiological consequences for pathogens, such as mycoplasmas, that have a reduced genome and no cell wall.
Insights
Mycoplasma agalactiae surface protein diversity is significantly higher in field strains due to expanded variable surface lipoproteins (Vpma) gene repertoires and chromosomal rearrangements. This genetic plasticity impacts pathogen evolution and epidemiology.
Area of Science:
- Microbiology
- Genomics
- Pathogen Evolution
Background:
- Mycoplasma agalactiae causes disease in small ruminants.
- Surface protein variation (Vpma phase variation) is key to M. agalactiae pathogenicity.
- The type strain PG2 has a single cluster of six vpma genes.
Purpose of the Study:
- To analyze the vpma gene repertoire in a field strain (5632) of Mycoplasma agalactiae.
- To understand the genetic mechanisms generating surface diversity in M. agalactiae.
- To assess the evolutionary and epidemiological implications of vpma gene variation.
Main Methods:
- Whole-genome analysis of the field strain 5632.
- Identification and characterization of vpma gene loci.
- Proteomic analysis to determine Vpma expression.
- Investigation of insertion sequences and recombination events.
Main Results:
- Field strain 5632 possesses an expanded repertoire of 23 vpma genes across two distant loci.
- Loci contain duplicated genes, with Vpma chimerism suggesting homologous recombination.
- At least 13 Vpmas are expressed, leading to greater surface combination possibilities than the type strain.
- Insertion sequences are implicated in vpma locus duplication.
Conclusions:
- Field strains of M. agalactiae exhibit significantly greater surface protein diversity than previously understood.
- Chromosomal rearrangements and gene duplications drive this enhanced variability.
- Mobile genetic elements play a crucial role in shaping the genomes of wall-less pathogens like mycoplasmas.
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