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Updated: Jun 23, 2026

Analysis of Single-cell Gene Transcription by RNA Fluorescent In Situ Hybridization (FISH)
Published on: October 7, 2012
Ectopic recombination of a malaria var gene during mitosis associated with an altered var switch rate
Michael F Duffy1, Timothy J Byrne, Celine Carret
1Department of Medicine at RMH, University of Melbourne, Parkville 3050, Australia. mduffy@unimelb.edu.au
Abstract:
The Plasmodium falciparum var multigene family encodes P. falciparum erythrocyte membrane protein 1, which is responsible for the pathogenic traits of antigenic variation and adhesion of infected erythrocytes to host receptors during malaria infection. Clonal antigenic variation of P. falciparum erythrocyte membrane protein 1 is controlled by the switching between exclusively transcribed var genes. The tremendous diversity of the var gene repertoire both within and between parasite strains is critical for the parasite's strategy of immune evasion. We show that ectopic recombination between var genes occurs during mitosis, providing P. falciparum with opportunities to diversify its var repertoire, even during the course of a single infection. We show that the regulation of the recombined var gene has been disrupted, resulting in its persistent activation although the regulation of most other var genes is unaffected. The var promoter and intron of the recombined var gene are not responsible for its atypically persistent activity, and we conclude that altered subtelomeric cis sequence is the most likely cause of the persistent activity of the recombined var gene.
Insights
Malaria parasites diversify their defense genes through recombination during mitosis. This process can lead to persistent activation of specific genes, aiding parasite immune evasion.
Area of Science:
- Malariology
- Molecular Parasitology
- Genetics
Background:
- The Plasmodium falciparum var multigene family encodes parasite proteins crucial for malaria pathogenesis.
- These proteins mediate antigenic variation and adhesion, enabling parasite immune evasion.
- Var gene repertoire diversity is key to Plasmodium falciparum's survival strategy.
Purpose of the Study:
- To investigate mechanisms of var gene diversification in Plasmodium falciparum.
- To understand the regulation of recombined var genes.
- To identify factors contributing to atypical gene activation.
Main Methods:
- Analysis of ectopic recombination events during Plasmodium falciparum mitosis.
- Investigation of var gene regulation, including promoter and intron activity.
- Assessment of subtelomeric cis sequences in recombined var genes.
Main Results:
- Ectopic recombination between var genes occurs during Plasmodium falciparum mitosis.
- Recombination provides opportunities for var gene repertoire diversification within infections.
- A recombined var gene exhibited persistently altered regulation and activation.
- The var promoter and intron were not responsible for the persistent activity.
Conclusions:
- Mitotic recombination is a mechanism for diversifying the var gene repertoire in Plasmodium falciparum.
- Altered subtelomeric cis sequences are the likely cause of persistent var gene activity.
- These findings offer insights into parasite immune evasion strategies.
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