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Methods to Discover Alternative Promoter Usage and Transcriptional Regulation of Murine Bcrp1
Published on: May 27, 2016
Human sex hormone-binding globulin gene expression- multiple promoters and complex alternative splicing
Atif M Nakhla1, Daniel J Hryb, William Rosner
1Department of Urology, Columbia University, New York, NY 10032, USA. an2327@columbia.edu
Human sex hormone-binding globulin (SHBG) gene expression is more complex than previously known, involving multiple promoters and alternative splicing. Novel SHBG transcripts are identified, with varied abundance in different tissues and cell lines, suggesting new roles in cancer.
Area of Science:
- Molecular biology
- Genetics
- Endocrinology
Background:
- Human sex hormone-binding globulin (SHBG) regulates sex steroid levels and signaling.
- SHBG gene expression is primarily controlled by a downstream promoter (P(L)), with a second promoter (P(T)) also known.
Purpose of the Study:
- To investigate the complexity of human SHBG gene transcription.
- To identify novel SHBG transcripts and their regulatory mechanisms.
- To analyze SHBG transcript expression patterns in various human tissues and cell lines.
Main Methods:
- Mapping of transcriptional start sites.
- Analysis of alternative splicing events.
- Transcriptional profiling across human tissues (prostate, breast, testis, liver, brain) and cell lines (LNCaP, MCF-7, HepG2).
Main Results:
- Human SHBG gene transcription is highly complex, with at least three promoters (P(L), P(T), P(N)) identified.
- Each promoter directs the expression of multiple transcripts through alternative splicing of exons 4, 5, 6, and/or 7.
- A novel first exon (1N) is associated with transcripts regulated by the P(N) promoter.
- SHBG transcripts are expressed in all tested tissues and cell lines, with distinct patterns and increased alternative splicing in cancer cell lines.
- A smaller immunoreactive SHBG species was detected in cancer cell lines.
Conclusions:
- The human SHBG gene exhibits a more intricate transcriptional landscape than previously understood.
- Novel alternatively spliced SHBG transcripts warrant further investigation into their functions in hormonally responsive tissues.
- Aberrant SHBG gene expression may play a role in the development of cancers, particularly in the breast and prostate.
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