Related Experiment Video
Updated: Jun 23, 2026

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Identification of NOD2/CARD15 mutations in Malaysian patients with Crohn's disease
Kek Heng Chua1, Ida Hilmi, Ching Ching Ng
1Department of Molecular Medicine, University of Malaya, Kuala Lumpur, Malaysia.
Insights
Novel NOD2/CARD15 gene mutations associated with Crohn's disease (CD) were identified in Asian populations. These findings suggest new disease predisposing mutations (DPM) in the Indian, Malay, and Chinese ethnic groups.
Area of Science:
- Genetics
- Gastroenterology
- Immunology
Background:
- The NOD2/CARD15 gene is a key susceptibility gene for Crohn's disease (CD).
- Common CD-associated mutations in developed countries are not prevalent in Asian populations.
- Investigating ethnic variations in NOD2/CARD15 mutations is crucial for understanding CD in diverse groups.
Purpose of the Study:
- To identify disease predisposing mutations (DPM) in the NOD2/CARD15 gene within a multiracial Asian population.
- To determine if there are ethnic-specific differences in NOD2/CARD15 mutations among Malay, Chinese, and Indian individuals with CD.
- To explore novel mutations associated with CD in Asian cohorts.
Main Methods:
- Blood samples from 45 CD patients and 300 healthy controls were analyzed.
- Polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and sequencing were used to detect mutations.
- Common mutations (R702W, G908R, 1007fs) and variants (SNP5, JW1) were investigated.
Main Results:
- The three common CD-associated mutations were not found in any participants.
- SNP5 mutation was identified in 13.3% of Indian CD patients.
- JW1 mutation was found in Malay, Chinese, Indian, and other ethnic groups, showing a strong association with CD overall and across ethnic groups.
Conclusions:
- The study suggests the existence of novel disease predisposing mutations in the NOD2/CARD15 gene among Asian CD patients.
- SNP5 and JW1 represent significant genetic associations with CD in the studied Asian populations.
- Further research is warranted to characterize these novel mutations and their functional impact on CD pathogenesis.
Objective:
The NOD2/CARD15 gene has been identified as an important susceptibility gene for Crohn's disease (CD) but the three common disease predisposing mutations (DPM) found in developed countries have not been identified in Asian populations. The aim of our study was to look for the DPM in our multiracial population and to discover whether there were any differences in the three major ethnic groups; Malay, Chinese and Indian.
Methods:
Blood samples from consecutive CD patients and healthy controls were obtained and analyzed for the three common mutations (R702W, G908R, 1007fs) but in addition to this, we also looked for the SNP5 and JW1 variants which are associated with CD in Ashkenazi Jews. A polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) technique was used to identify the mutations, which was confirmed by sequencing. The baseline socio-demography and clinical characteristics of the CD patients were recorded.
Results:
Overall 45 patients (three Malays, 15 Chinese, 26 Indians and one other) with confirmed CD and 300 controls were recruited. The three common DPM were not observed in either the CD patients or the controls. Neither the SNP5 nor the JW1 mutation was found in any of the controls. However, the SNP5 mutation was identified in six (13.3%) Indian CD patients and the JW1 mutation in eight CD patients who are different from those carrying the SNP5 mutation: one Malay (33.3%), two Chinese (13.3%), one other (Portuguese) and four Indians (15.4%). The presence of SNP5 was strongly associated with CD in the Indian population and that of JW1 was strongly associated with CD overall and in each of the major ethnic groups. There was a trend towards a younger age of onset and stricturing disease in patients carrying the JW1 mutation.
Conclusion:
These findings suggest the presence of novel DPM in the NOD2/CARD15 gene in Asian patients with CD.
More Related Videos
03:45Investigating the Pathogenesis of MYH7 Mutation Gly823Glu in Familial Hypertrophic Cardiomyopathy using a Mouse Model
Published on: August 8, 2022
05:58Digital Polymerase Chain Reaction Assay for the Genetic Variation in a Sporadic Familial Adenomatous Polyposis Patient Using the Chip-in-a-tube Format
Published on: August 20, 2018
Related Concept Videos
Inflammatory Bowel Disease III: Crohn's Disease
Inflammatory Bowel Disease II: Crohn's Disease
Inflammatory bowel disease, commonly known as IBD, refers to a collection of disorders that lead to persistent inflammation of the gastrointestinal tract. The two types of IBD are ulcerative colitis, which impacts the colon, and Crohn's disease, which can involve any part of the gastrointestinal segment.
Crohn's disease
Crohn's disease is a chronic, systemic inflammatory bowel disease (IBD) that predominantly affects the gastrointestinal tract. It is marked by transmural...
Inflammatory Bowel Disease II: Ulcerative Colitis
Single Nucleotide Polymorphisms-SNPs