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Updated: Jun 23, 2026

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Workflow and Tools for Crystallographic Fragment Screening at the Helmholtz-Zentrum Berlin
Published on: March 3, 2021
From fragment to clinical candidate--a historical perspective
Gianni Chessari1, Andrew J Woodhead
1Astex Therapeutics Ltd., 436 Cambridge Science Park, Milton Road, Cambridge CB4 0QA, UK.
Drug Discovery Today
|May 12, 2009
Summary
Fragment-based drug discovery, using small molecules, is now a mainstream approach. This method has successfully advanced compounds into clinical trials, complementing traditional screening techniques.
Area of Science:
- Drug Discovery and Development
- Medicinal Chemistry
- Biotechnology
Background:
- Fragment-based drug discovery (FBDD) has evolved significantly over the past decade.
- Low molecular weight fragments (<300 MW) with weak binding affinities are now recognized as viable starting points for drug development.
- FBDD is now an established strategy in the pharmaceutical and biotechnology industries.
Purpose of the Study:
- To provide a historical overview of the development of fragment-based drug discovery.
- To highlight the increasing acceptance and integration of FBDD as a complementary strategy to high-throughput screening.
- To showcase clinical compounds that have resulted from FBDD approaches.
Main Methods:
- Historical review of fragment-based drug discovery evolution.
- Analysis of the progression of fragment hits into lead series and clinical candidates.
- Case studies of clinical compounds discovered through FBDD.
Main Results:
- Fragment-based drug discovery has rapidly gained acceptance in the scientific community.
- Weakly binding, low molecular weight fragments are now considered valuable starting points.
- Several clinical compounds have been successfully developed using FBDD.
Conclusions:
- Fragment-based drug discovery is a validated and effective strategy in modern drug discovery.
- FBDD offers a complementary approach to traditional high-throughput screening.
- The success of FBDD is evidenced by its contribution to clinical drug candidates.
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