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Updated: Jun 23, 2026

Parallel Measurement of Circadian Clock Gene Expression and Hormone Secretion in Human Primary Cell Cultures
Published on: November 11, 2016
Clock genes display rhythmic expression in human hearts
Valentin Leibetseder1, Susanne Humpeler, Martin Svoboda
1Center of Physiology and Pharmacology, University Vienna, Austria. valentin.leibetseder@meduniwien.ac.at
Insights
Human heart cells express key circadian clock genes (PER1, PER2, BMAL1), with distinct daily rhythms that differ from rodents. These myocardial clock gene patterns may link to heart condition timing.
Area of Science:
- Cardiovascular Biology
- Chronobiology
- Molecular Cardiology
Background:
- Circadian clock genes regulate physiological processes in mammals.
- Previous studies identified clock genes in rodent hearts, linking their disruption to myocardial dysfunction.
- Limited data existed on clock gene expression and function in human hearts.
Purpose of the Study:
- To investigate the expression and circadian rhythmicity of core clock genes (PER1, PER2, BMAL1, CRY1) in human heart tissue.
- To compare clock gene expression patterns between patients with coronary heart disease, cardiomyopathy, and healthy individuals.
- To determine if human myocardial clock gene rhythms differ from those observed in rodents.
Main Methods:
- Real-time PCR was used to quantify mRNA levels of PER1, PER2, BMAL1, and CRY1.
- Circadian expression patterns were analyzed using sliding means and Cosinor functions.
- Statistical analyses (ANOVAs) compared rhythmic patterns across patient groups and healthy donors.
Main Results:
- All four clock genes (PER1, PER2, BMAL1, CRY1) were expressed in human heart tissue.
- PER1, PER2, and BMAL1 exhibited significant circadian rhythms, with distinct acrophases (peak times) in the morning and evening.
- CRY1 did not show a detectable circadian rhythm. Rhythmic patterns were consistent across all patient groups.
- Human myocardial clock gene staging was found to be in antiphase compared to rodents.
Conclusions:
- The human heart possesses robust circadian clock gene oscillations, particularly for PER1, PER2, and BMAL1.
- These myocardial circadian rhythms are more pronounced than in other human tissues.
- The timing of PER and BMAL1 rhythm peaks and troughs aligns with periods of increased myocardial events, suggesting a potential role in cardiovascular health.
Abstract:
Thus far, clock genes in the heart have been described only in rodents, and alterations of these genes have been associated with various myocardial malfunctions. In this study, we analyzed the expression of clock genes in human hearts. Left papillary muscles of 16 patients with coronary heart disease, 39 subjects with cardiomyopathy, and 9 healthy donors (52 males and 12 females, mean age 55.7+/-11.2; 16-70 yrs) were obtained during orthotopic heart transplantation. We assessed the mRNA levels of PER1, PER2, BMAL1, and CRY1 by real time PCR and analyzed their rhythmic expression by sliding means and Cosinor functions. Furthermore, we sought for differences between the three groups (by ANOVAs) for both the total 24 h period and separate time bins. All four clock genes were expressed in human hearts. The acrophases (circadian rhythm peak time) of the PER mRNAs occurred in the morning (PER1: 07:44 h [peak level 187% higher than trough, p = .008]; PER2: 09:42 h [peak 254% higher than trough, p < .0001], and BMAL1 mRNA in the evening at 21:44 h [peak 438% higher than trough; p < .0001]. No differences were found in the rhythmic patterns between the three groups. No circadian rhythm was detected in CRY1 mRNA in any group. PER1, PER2, and BMAL1 mRNAs revealed clear circadian rhythms in the human heart, with their staging being in antiphase to those in rodents. The circadian amplitudes of the mRNA clock gene levels in heart tissue are more distinct than in any other human tissue so far investigated. The acrophase of the myocardial PER mRNAs and the trough of the myocardial BMAL1 coincide to the time of day of most frequent myocardial incidents.
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