Search research articles

ABOUT JoVE

Overview Leadership Blog JoVE Help Center

AUTHORS

Publishing Process Editorial Board Scope & Policies Peer Review FAQ Submit

LIBRARIANS

Testimonials Subscriptions Access Resources Library Advisory Board FAQ

RESEARCH

JoVE Journal Methods Collections JoVE Encyclopedia of Experiments Archive

EDUCATION

JoVE Core JoVE Business JoVE Science Education JoVE Lab Manual Faculty Resource Center Faculty Site

Terms & Conditions of Use

Related Concept Videos

Evolutionary Relationships through Genome Comparisons

Evolutionary Relationships through Genome Comparisons

Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...

Modern Molecular Taxonomy

Modern Molecular Taxonomy

Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by

Same author

Reproducibility of AI-Informed Coronary Computed Tomography Angiography-Derived Coronary Plaque Volume Quantification.

JACC. Advances·2026

Same author

Programmable memtransistor array with temporal dynamics modulation for efficient time-series data processing.

Nature communications·2026

Same author

Understanding research priorities in home health care: a topic modeling analysis of the health services literature.

BMC health services research·2026

Same author

Mapping Temporal Dynamics in Hospice Research: A Topic Modeling Analysis of PubMed Abstracts.

Journal of palliative medicine·2026

Same author

Tunable Dynamics via Dual-Ion Modulation for Event-based Data Processing Using a Highly Uniform and Self-Rectifying Memristor Array.

Advanced science (Weinheim, Baden-Wurttemberg, Germany)·2026

Same author

Enhancing Community-Based Nursing Decision Support: Machine Learning Models for Diabetes Risk Prediction Using Home Health Nursing Notes.

Public health nursing (Boston, Mass.)·2026

Search research articles

Related Experiment Video

Updated: Jun 23, 2026

Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine

Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine

Published on: December 22, 2017

GarlicESTdb: an online database and mining tool for garlic EST sequences.

Dae-Won Kim¹, Tae-Sung Jung, Seong-Hyeuk Nam

¹Genome Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-306, Korea. todaewon@kribb.re.kr

BMC Plant Biology

|May 19, 2009

Summary

GarlicESTdb is a new database for garlic (Allium sativum) gene expression, offering comprehensive analysis tools. This resource aids researchers in exploring garlic

More Related Videos

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Published on: December 7, 2021

Mass Spectrometry-Guided Genome Mining as a Tool to Uncover Novel Natural Products

Mass Spectrometry-Guided Genome Mining as a Tool to Uncover Novel Natural Products

Published on: March 12, 2020

Related Experiment Videos

Last Updated: Jun 23, 2026

Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine

Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine

Published on: December 22, 2017

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Published on: December 7, 2021

Mass Spectrometry-Guided Genome Mining as a Tool to Uncover Novel Natural Products

Mass Spectrometry-Guided Genome Mining as a Tool to Uncover Novel Natural Products

Published on: March 12, 2020

Area of Science:

Bioinformatics
Genomics
Plant Science

Background:

Garlic (Allium sativum) has significant nutritional and pharmaceutical value, driving increased research interest.
Existing resources lack comprehensive databases for garlic Expressed Sequence Tags (ESTs), hindering gene discovery and genome annotation.
There is a growing need for advanced tools to analyze garlic gene expression for research and development.

Purpose of the Study:

To develop and present GarlicESTdb, an integrated database and mining tool for garlic ESTs.
To facilitate comprehensive analysis of garlic gene expression and support future genome annotation efforts.
To provide a centralized, accessible platform for researchers studying garlic.

Main Methods:

Construction of GarlicESTdb using 21,595 in-house collected ESTs.
Development of an automated analysis pipeline (JAVA) for EST preprocessing, assembly, and annotation.
Implementation of a J2EE-based web application for database querying, dynamic page generation, and KEGG pathway mapping.

Main Results:

GarlicESTdb provides access to putative annotation, SNP, and tandem repeat data.
Features include text search, BLAST analysis, data download, and a curation system for annotation refinement.
The database enables interactive mining of EST contigs and datasets from various libraries.

Conclusions:

GarlicESTdb is the first online database for garlic EST sequences, offering free access and download.
The database includes features for interactive mining, curation, expression profiling, and functional annotation statistics.
GarlicESTdb is a crucial resource for biologists, enhancing data-mining and experimental efficiency in garlic research.