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Updated: Jun 23, 2026

Modeling the Functional Network for Spatial Navigation in the Human Brain
Published on: October 13, 2023
Modeling the spatio-temporal network that drives patterning in the vertebrate central nervous system
Yuichi Nishi1, Hongkai Ji, Wing H Wong
1Department of Molecular and Cellular Biology, Harvard University , Cambridge, MA 02138, USA.
This review explores the gene regulatory network controlling ventral neural tube patterning in vertebrate embryos. It details how Sonic hedgehog (Shh) gradients and transcription factors establish distinct neuronal cell fates through hierarchical gene expression and cross-repression.
Area of Science:
- Developmental Biology
- Neuroscience
- Genetics
Background:
- Vertebrate embryogenesis involves precise patterning of the neural tube along anterior-posterior and dorsal-ventral axes.
- Dorsal-ventral patterning is critically regulated by the graded distribution of Sonic hedgehog (Shh) signaling.
- Shh acts as a morphogen, specifying ventral neuron subtypes in a concentration-dependent manner.
Purpose of the Study:
- To review the gene regulatory network governing ventral neural tube patterning.
- To elucidate the roles of transcription factors in defining neural progenitor subtypes and identities.
- To discuss methods for clarifying the regulatory relationships within this network.
Main Methods:
- Review of existing literature on neural tube development and gene regulation.
- Analysis of inductive signaling pathways, particularly Sonic hedgehog (Shh).
- Examination of transcription factor networks, including hierarchical expression and cross-repression.
Main Results:
- Patterned expression of transcription factors defines distinct neural progenitor subtypes.
- Repressive interactions between transcription factors sharpen progenitor boundaries.
- Hierarchical gene expression (signal → progenitor factors → precursor factors → neural markers) and cross-repression characterize the network.
Conclusions:
- The gene regulatory network of ventral neural tube patterning involves hierarchical gene expression and cross-repressive interactions.
- While key regulators are identified, precise regulatory relationships require further clarification.
- Ongoing research aims to extend the understanding of this complex developmental network.
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