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Crystal structure of the rad9-rad1-hus1 DNA damage checkpoint complex--implications for clamp loading and regulation
Andrew S Doré1, Mairi L Kilkenny, Neil J Rzechorzek
1CR-UK DNA Repair Enzymes Group, Section of Structural Biology, The Institute of Cancer Research, 237 Fulham Road, Chelsea, SW36JB London, UK.
Insights
The Rad9-Rad1-Hus1 (9-1-1) complex, crucial for DNA damage response, forms a toroidal structure. This structure reveals unique binding sites and a single repair enzyme interaction site, offering insights into DNA repair mechanisms.
Area of Science:
- Cellular Biology
- Molecular Biology
- Structural Biology
Background:
- The Rad9-Rad1-Hus1 (9-1-1) complex is essential for DNA damage checkpoint signaling.
- It is recruited to DNA damage sites and activates ATR signaling via Chk1.
- The complex may also directly participate in DNA repair through interactions with repair enzymes.
Purpose of the Study:
- To determine the crystal structure of the human 9-1-1 complex.
- To elucidate the structural basis for its heterotrimeric assembly and function.
- To investigate the interaction of 9-1-1 with DNA repair enzymes and regulatory proteins.
Main Methods:
- X-ray crystallography was used to determine the 3D structure of the human 9-1-1 complex.
- Biochemical assays were performed to analyze protein-protein interactions and binding sites.
Main Results:
- The human 9-1-1 complex adopts a toroidal structure, similar to the PCNA clamp.
- The structure reveals unique subunit interfaces critical for heterotrimer formation.
- A single, conserved site for DNA repair enzyme binding was identified on the 9-1-1 complex.
- This binding site can be competitively inhibited by p21(cip1/waf1).
Conclusions:
- The determined structure provides a molecular basis for 9-1-1 complex assembly and function in DNA damage response.
- The unique structural features of 9-1-1 facilitate its role in DNA repair and checkpoint signaling.
- The competitive inhibition by p21 highlights a potential regulatory mechanism at the DNA repair level.
Abstract:
Rad9, Rad1, and Hus1 form a heterotrimeric complex (9-1-1) that is loaded onto DNA at sites of DNA damage. DNA-loaded 9-1-1 activates signaling through the Chk1 arm of the DNA damage checkpoint response via recruitment and stimulation of ATR. Additionally, 9-1-1 may play a direct role in facilitating DNA damage repair via interaction with a number of DNA repair enzymes. We have now determined the crystal structure of the human 9-1-1 complex, revealing a toroidal structure with a similar architecture to the homotrimeric PCNA DNA-binding clamp. The structure explains the formation of a unique heterotrimeric arrangement and reveals significant differences among the three subunits in the sites implicated in binding to the clamp loader and to ligand proteins. Biochemical analysis reveals a single repair enzyme-binding site on 9-1-1 that can be blocked competitively by the PCNA-binding cell-cycle regulator p21(cip1/waf1).
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