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Updated: Jun 23, 2026

In Vitro Selection of Engineered Transcriptional Repressors for Targeted Epigenetic Silencing
Published on: May 5, 2023
The human protein kinase HIPK2 phosphorylates and downregulates the methyl-binding transcription factor ZBTB4
D Yamada1, R Pérez-Torrado, G Filion
1CNRS UMR218, Institut Curie, Paris, France.
Abstract:
HIPK2 is a eukaryotic Serine-Threonine kinase that controls cellular proliferation and survival in response to exogenous signals. Here, we show that the human transcription factor ZBTB4 is a new target of HIPK2. The two proteins interact in vitro, colocalize and associate in vivo, and HIPK2 phosphorylates several conserved residues of ZBTB4. Overexpressing HIPK2 causes the degradation of ZBTB4, whereas overexpressing a kinase-deficient mutant of HIPK2 has no effect. The chemical activation of HIPK2 also decreases the amount of ZBTB4 in cells. Conversely, the inhibition of HIPK2 by drugs or by RNA interference causes a large increase in ZBTB4 levels. This negative regulation of ZBTB4 by HIPK2 occurs under normal conditions of cell growth. In addition, the degradation is increased by DNA damage. These findings have two consequences. First, we have recently shown that ZBTB4 inhibits the transcription of p21. Therefore, the activation of p21 by HIPK2 is two-pronged: stimulation of the activator p53, and simultaneous repression of the inhibitor ZBTB4. Second, ZBTB4 is also known to bind methylated DNA and repress methylated sequences. Consequently, our findings raise the possibility that HIPK2 might influence the epigenetic regulation of gene expression at loci that remain to be identified.
Insights
The homeodomain-interacting protein kinase 2 (HIPK2) targets the ZBTB4 transcription factor for degradation, impacting cell proliferation and survival. This discovery reveals a new regulatory pathway influencing gene expression and DNA methylation.
Area of Science:
- Molecular Biology
- Cell Biology
- Epigenetics
Background:
- Homeodomain-interacting protein kinase 2 (HIPK2) is a key regulator of cellular proliferation and survival.
- Transcription factors play crucial roles in controlling gene expression.
- ZBTB4 is a transcription factor known to bind methylated DNA and repress transcription.
Purpose of the Study:
- To investigate the regulatory relationship between HIPK2 and the transcription factor ZBTB4.
- To elucidate the mechanism by which HIPK2 affects ZBTB4 levels.
- To understand the functional consequences of HIPK2-mediated regulation of ZBTB4.
Main Methods:
- In vitro protein interaction assays.
- Co-localization and in vivo association studies.
- Overexpression of HIPK2 and kinase-deficient mutants.
- Chemical activation and drug inhibition of HIPK2.
- RNA interference (RNAi) for HIPK2 knockdown.
- Analysis of ZBTB4 protein levels and p21 transcription.
Main Results:
- HIPK2 directly interacts with and phosphorylates ZBTB4.
- HIPK2 promotes the degradation of ZBTB4 in a kinase-dependent manner.
- HIPK2 activation leads to decreased ZBTB4 levels, while inhibition increases ZBTB4 levels.
- HIPK2-mediated ZBTB4 degradation enhances p21 transcription.
- HIPK2 influences ZBTB4 levels under normal growth conditions and upon DNA damage.
Conclusions:
- HIPK2 negatively regulates ZBTB4 protein stability through phosphorylation-dependent degradation.
- HIPK2 contributes to the activation of p21 by inhibiting its repressor ZBTB4.
- HIPK2 may play a role in epigenetic regulation by influencing ZBTB4's interaction with methylated DNA.
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