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Sedimentation Equilibrium of a Small Oligomer-forming Membrane Protein: Effect of Histidine Protonation on Pentameric Stability
Published on: April 2, 2015
Acid/base equilibria in clusters and their role in proton exchange membranes: computational insight
Vassiliki-Alexandra Glezakou1, Michel Dupuis, Christopher J Mundy
1Chemical and Materials Science Division, Fundamental Science Directorate, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Abstract:
We describe molecular orbital theory and ab initio molecular dynamics studies of acid/base equilibria of clusters AH:(H2O)n <==> A-: H+ (H2O)n in low hydration regime (n = 1-4), where AH is a model of perfluorinated sulfonic acids, RSO3H (R = CF3CF2), encountered in polymer electrolyte membranes for fuel cells. Free energy calculations on the neutral and ion pair structures for n=3 indicate that the two configurations are close in energy and are accessible in the fluctuation dynamics of proton transport. For n=1, 2 the only relevant configuration is the neutral form. This was verified through ab initio metadynamics simulations. These findings suggest that bases are directly involved in the proton transport at low, n=3, hydration level, but not at lower hydration levels, n < or =2. In addition, the gas phase proton affinity of the model sulfonic acid H was found to be comparable to the proton affinity of water. The free energy profile for proton exchange between a protonated acid-water cluster configuration and a neutral acid-hydronium ion cluster configuration showed that such configurations are nearly isoenergetic. Thus, protonated acids can also play a role in proton transport under low hydration conditions and under high concentration of protons.
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