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Analyzing and Building Nucleic Acid Structures with 3DNA
Published on: April 26, 2013
Structure of the human Rev1-DNA-dNTP ternary complex
Michael K Swan1, Robert E Johnson, Louise Prakash
1Department of Structural and Chemical Biology, Mount Sinai School of Medicine, New York, NY 10029, USA.
Journal of Molecular Biology
|May 26, 2009
Summary
Human and yeast Rev1 polymerases share a unique DNA replication strategy, dictating nucleotide and template base identity. Human Rev1 possesses structural additions for enhanced translesion DNA synthesis, particularly for bulky DNA adducts.
Area of Science:
- Molecular Biology
- Structural Biology
- Biochemistry
Background:
- Y-family DNA polymerases exhibit diverse replication strategies for DNA lesions.
- Yeast Rev1 employs a unique mechanism where the polymerase controls nucleotide and template base selection.
Purpose of the Study:
- To investigate the conservation of yeast Rev1's radical replication strategy in human Rev1.
- To elucidate the structural features of human Rev1 that facilitate translesion DNA synthesis.
Main Methods:
- Comparative structural analysis of yeast and human Rev1 ternary complexes.
- Identification and characterization of unique structural inserts (I1 and I2) in human Rev1.
Main Results:
- Key elements of yeast Rev1's replication strategy, including template G eviction and surrogate pairing, are conserved in human Rev1.
- Human Rev1 features two large inserts (I1 and I2) augmenting its catalytic core.
- Insert I1 may mediate protein-protein interactions, while I2 acts as a flap over the template G binding pocket.
Conclusions:
- Human Rev1 conserves a unique DNA replication strategy with yeast Rev1.
- Novel structural features in human Rev1 enhance its capacity for efficient and accurate translesion DNA synthesis.
- These features are crucial for processing bulky DNA adducts, such as N(2)-deoxyguanosine adducts, in human cells.
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