Related mechanisms for mRNA and rRNA quality control

Kylie D Swisher1, Roy Parker

  • 1Howard Hughes Medical Institute, University of Arizona, Tucson, AZ 85721, USA.

Molecular Cell
|June 2, 2009
PubMed

Insights

Different RNA quality control systems recognize distinct ribosomal RNA (rRNA) defects. A stalled ribosome can trigger mRNA decay or nonfunctional 18S rRNA degradation, highlighting crucial cellular surveillance mechanisms.

Area of Science:

  • Molecular biology
  • Cellular quality control
  • RNA biology

Background:

  • Ribosomal RNA (rRNA) is essential for protein synthesis.
  • Cellular mechanisms exist to monitor and maintain RNA quality.
  • Defects in rRNA can compromise cellular function.

Purpose of the Study:

  • To investigate how different ribosomal RNA (rRNA) defects are recognized by cellular quality control systems.
  • To determine the downstream consequences of a stalled ribosome.
  • To elucidate the interplay between ribosome stalling and RNA degradation pathways.

Main Methods:

  • Analysis of RNA quality control pathways.
  • Investigation of ribosome dynamics.
  • Studies on mRNA decay and rRNA degradation.

Main Results:

  • Distinct RNA quality control systems recognize specific rRNA defects.
  • A stalled ribosome can initiate distinct cellular responses.
  • Evidence suggests a stalled ribosome can trigger either no-go decay of messenger RNA (mRNA) or degradation of nonfunctional 18S rRNA.

Conclusions:

  • Cellular surveillance distinguishes between different types of rRNA functional defects.
  • Ribosome stalling acts as a signal for specific RNA degradation pathways.
  • These findings reveal a sophisticated quality control network for maintaining RNA integrity.

Related Concept Videos

Nuclear Export of mRNA02:31

Nuclear Export of mRNA

Before mRNAs are exported to the cytoplasm, it is crucial to check each mRNA for structural and functional integrity. Eukaryotic cells use several different mechanisms, collectively known as mRNA surveillance, to look for irregularities in mRNAs. Irregular or aberrant mRNA are rapidly degraded by various enzymes. If a defective mRNA escapes the surveillance, it would be translated into a protein which would either be non-functional or not function properly. One of the primary irregularities in...
RNA Stability01:53

RNA Stability

Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
RNA Stability01:53

RNA Stability

Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
Regulation of Expression at Multiple Steps01:23

Regulation of Expression at Multiple Steps

The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the addition of a...
Regulation of Expression Occurs at Multiple Steps02:24

Regulation of Expression Occurs at Multiple Steps

Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...