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Updated: Jun 22, 2026

Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
Predicting node positivity in gastric cancer from gene expression profiles.
Michael J Korenberg1, Bryan J Dicken, Sambasivarao Damaraju
1Department of Electrical and Computer Engineering, Queen's University, Kingston, Ontario K7L 3N6, Canada. korenber@queensu.ca
Researchers developed a 28-gene predictor for gastric cancer aggressiveness, outperforming lymphovascular invasion (LVI) in forecasting node positivity (N+). This gene expression model offers potential for pre-operative risk assessment in gastric cancer patients.
Area of Science:
- Oncology
- Molecular Biology
- Genomics
Background:
- Lymphovascular invasion (LVI) is a prognostic indicator in gastric cancer, often assessed via biopsy.
- Endoscopic biopsies allow for both LVI assessment and gene expression profiling.
Purpose of the Study:
- To investigate gene expression patterns associated with LVI in gastric cancer.
- To develop a gene expression-based predictor of tumor aggressiveness and nodal positivity (N+).
Main Methods:
- Analysis of gene expression profiles from gastric cancer patient cohorts.
- Development of a 28-gene signature to predict tumor aggressiveness.
- Correlation of the gene signature's aggressiveness ranking with nodal positivity (N+).
Main Results:
- A significant positive correlation was found between the 28-gene model's tumor aggressiveness ranking and N+ status.
- The gene expression model demonstrated a stronger correlation with N+ status than LVI alone.
- The model's predictive capability for tumor aggressiveness was statistically significant.
Conclusions:
- A 28-gene signature can predict gastric cancer aggressiveness and nodal positivity.
- This gene expression-based approach may offer a more accurate pre-operative risk assessment tool than LVI.
- Gene expression profiling from endoscopic biopsies holds promise for personalized gastric cancer management.
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