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Related Concept Videos

Attachment of Sister Chromatids02:57

Attachment of Sister Chromatids

As cells progress into mitosis, the nuclear envelope breaks down, and the condensed chromosomes are exposed to the array of bipolar microtubules of the mitotic spindle. The kinetochore, a large, disc-shaped protein complex, is present at the centromere region of the sister chromatids and acts as a binding site for the microtubules.  Usually, the plus-end of a single microtubule is embedded within the kinetochore. However, some kinetochores first establish lateral contact with the side-wall of a...
Attachment of Sister Chromatids02:57

Attachment of Sister Chromatids

As cells progress into mitosis, the nuclear envelope breaks down, and the condensed chromosomes are exposed to the array of bipolar microtubules of the mitotic spindle. The kinetochore, a large, disc-shaped protein complex, is present at the centromere region of the sister chromatids and acts as a binding site for the microtubules.  Usually, the plus-end of a single microtubule is embedded within the kinetochore. However, some kinetochores first establish lateral contact with the side-wall of a...
The Y Chromosome Determines Maleness02:19

The Y Chromosome Determines Maleness

The Y chromosome is a sex chromosome found in several vertebrates and mammals, including humans. In addition to 22 pairs of autosomes, the human males have one X chromosome and one Y chromosome. In these organisms, the presence or absence of the Y chromosome determines the development of male traits.
Evolution
Around 300 million years ago, the two sex chromosomes diverged from two identical autosomal chromosomes. Over time, the Y chromosome has lost most of its genes, shrinking in size. Today,...
Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the timing and level of...
Inheritance of Chromatin Structures03:17

Inheritance of Chromatin Structures

Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying DNA...
Euchromatin01:01

Euchromatin

The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions take up more dye, appearing darker, while the less-compact areas take up less dye and appear lighter. Based on the compaction level, chromatins are classified into two primary forms – euchromatin and heterochromatin.
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...

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Related Experiment Video

Updated: Jun 22, 2026

Analysis of Protein-protein Interactions and Co-localization Between Components of Gap, Tight, and Adherens Junctions in Murine Mammary Glands
11:31

Analysis of Protein-protein Interactions and Co-localization Between Components of Gap, Tight, and Adherens Junctions in Murine Mammary Glands

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Matrin 3: chromosomal distribution and protein interactions.

Michael J Zeitz1, Kishore S Malyavantham, Brandon Seifert

  • 1Department of Biological Sciences, University at Buffalo, State University of New York, Buffalo, New York 14260, USA.

Journal of Cellular Biochemistry
|June 30, 2009
PubMed
Summary

Matrin 3 (matr3) associates with active chromosome territories but avoids inactive ones. This nuclear matrix protein interacts with numerous proteins involved in RNA metabolism and chromatin remodeling.

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Immunofluorescence Analysis of Endogenous and Exogenous Centromere-kinetochore Proteins
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DamID-seq: Genome-wide Mapping of Protein-DNA Interactions by High Throughput Sequencing of Adenine-methylated DNA Fragments
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Related Experiment Videos

Last Updated: Jun 22, 2026

Analysis of Protein-protein Interactions and Co-localization Between Components of Gap, Tight, and Adherens Junctions in Murine Mammary Glands
11:31

Analysis of Protein-protein Interactions and Co-localization Between Components of Gap, Tight, and Adherens Junctions in Murine Mammary Glands

Published on: May 30, 2017

Immunofluorescence Analysis of Endogenous and Exogenous Centromere-kinetochore Proteins
05:35

Immunofluorescence Analysis of Endogenous and Exogenous Centromere-kinetochore Proteins

Published on: March 3, 2016

DamID-seq: Genome-wide Mapping of Protein-DNA Interactions by High Throughput Sequencing of Adenine-methylated DNA Fragments
09:14

DamID-seq: Genome-wide Mapping of Protein-DNA Interactions by High Throughput Sequencing of Adenine-methylated DNA Fragments

Published on: January 27, 2016

Area of Science:

  • Cell Biology
  • Molecular Biology
  • Genetics

Background:

  • Matrin 3 (matr3) is a key nuclear matrix protein implicated in various cellular functions.
  • Understanding matr3's localization and interactions is crucial for defining its multifaceted roles.

Purpose of the Study:

  • To investigate the association of matr3 with chromosome territories.
  • To identify proteins that interact with matr3 within the nucleus.

Main Methods:

  • Immunofluorescence microscopy in fixed and live cells (using matr3-GFP).
  • Yeast two-hybrid analysis to identify interacting proteins.
  • Co-localization and co-immunoprecipitation assays in HeLa cells.

Main Results:

  • Matr3 localizes to autosomal and active X chromosome territories, excluding inactive X chromosomes and heterochromatin.
  • Yeast two-hybrid screening identified 33 nuclear proteins interacting with matr3, including those in RNA metabolism and chromatin remodeling.
  • Confirmation of interactions between matr3 and selected proteins, including scaffold attachment factor A (SAFA), via co-immunoprecipitation.

Conclusions:

  • Matr3 exhibits specific localization patterns within the nucleus relative to chromosome activity and heterochromatin.
  • Matr3 interacts with a diverse set of nuclear proteins, particularly those involved in RNA metabolism and chromatin organization.
  • These findings provide insights into the functional repertoire of matr3 within the nuclear architecture.