Related Experiment Video
Updated: Jun 21, 2026

Laser Micro-Irradiation to Study DNA Recruitment During S Phase
Published on: April 16, 2021
Regulation of DNA replication by the S-phase DNA damage checkpoint
Nicholas Willis1, Nicholas Rhind
1Biochemistry and Molecular Pharmacology, University on Massachusetts Medical School, Worcester MA 01605, USA. nick.rhind@umassmed.edu.
Abstract:
Cells slow replication in response to DNA damage. This slowing was the first DNA damage checkpoint response discovered and its study led to the discovery of the central checkpoint kinase, Ataxia Telangiectasia Mutated (ATM). Nonetheless, the manner by which the S-phase DNA damage checkpoint slows replication is still unclear. The checkpoint could slow bulk replication by inhibiting replication origin firing or slowing replication fork progression, and both mechanisms appear to be used. However, assays in various systems using different DNA damaging agents have produced conflicting results as to the relative importance of the two mechanisms. Furthermore, although progress has been made in elucidating the mechanism of origin regulation in vertebrates, the mechanism by which forks are slowed remains unknown. We review both past and present efforts towards determining how cells slow replication in response to damage and try to resolve apparent conflicts and discrepancies within the field. We propose that inhibition of origin firing is a global checkpoint mechanism that reduces overall DNA synthesis whenever the checkpoint is activated, whereas slowing of fork progression reflects a local checkpoint mechanism that only affects replisomes as they encounter DNA damage and therefore only affects overall replication rates in cases of high lesion density.
Insights
Cells slow DNA replication upon damage via two mechanisms: inhibiting origin firing and slowing replication forks. This review clarifies their roles in DNA damage response, highlighting ATM
Area of Science:
- Cellular response to DNA damage
- DNA replication regulation
- Cell cycle checkpoints
Background:
- Cellular replication slows in response to DNA damage, a phenomenon linked to the discovery of ATM.
- The precise mechanisms by which S-phase DNA damage checkpoints impede replication remain incompletely understood.
- Conflicting data exists regarding the relative importance of inhibiting origin firing versus slowing replication fork progression.
Purpose of the Study:
- To review and synthesize current knowledge on how cells slow replication following DNA damage.
- To resolve discrepancies in the literature regarding the roles of origin firing inhibition and fork slowing.
- To propose a model differentiating global and local checkpoint mechanisms.
Main Methods:
- Literature review of studies on DNA damage checkpoints and replication.
- Analysis of conflicting experimental results across different systems and damaging agents.
- Synthesis of findings to propose a unified mechanistic model.
Main Results:
- Both inhibition of replication origin firing and slowing of replication fork progression contribute to replication stress response.
- Origin firing inhibition acts as a global checkpoint mechanism, reducing overall DNA synthesis.
- Fork slowing is a local mechanism, impacting replisomes encountering DNA damage.
Conclusions:
- Replication origin firing inhibition is a global response to DNA damage checkpoints.
- Replication fork slowing is a localized response, significant at high lesion densities.
- This dual mechanism ensures genome stability during DNA damage.
Related Concept Videos
DNA Damage can Stall the Cell Cycle
DNA Damage Can Stall the Cell Cycle
S-Cdk Initiates DNA Replication
Two states at the origin of replication
In eukaryotes, the initiation of replication occurs at many sites on the chromosomes, called the origins of replication.
S-Cdk Initiates DNA Replication
Two states at the origin of replication
In eukaryotes, the initiation of replication occurs at many sites on the chromosomes, called the origins of replication.
Negative Regulator Molecules
Restarting Stalled Replication Forks

