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Updated: Jun 21, 2026

Genotyping of Staphylococcus aureus by Ribosomal Spacer PCR (RS-PCR)
Published on: November 4, 2016
Comparisons between geographically diverse samples of carried Staphylococcus aureus
Raymond Ruimy1, Laurence Armand-Lefevre, Francois Barbier
1Laboratoire Associé Centre National de Référence Résistance dans les Flores Commensales, Hôpital Bichat-Claude Bernard (AP-HP), 75018 Paris, France. raymond.ruimy@bch.ap-hop-paris.fr
Global Staphylococcus aureus carriage diversity remains largely unknown. This study analyzed 300 isolates from four countries, revealing distinct geographic patterns and a novel lineage in Cambodia, impacting our understanding of bacterial population structure.
Area of Science:
- Microbiology
- Population Genetics
- Epidemiology
Background:
- Staphylococcus aureus asymptomatically colonizes about one-third of the human population globally.
- Significant gaps exist in understanding the global diversity and geographic partitioning of Staphylococcus aureus carriage strains.
Purpose of the Study:
- To characterize the global diversity of Staphylococcus aureus carriage isolates.
- To investigate the geographic distribution and population structure of Staphylococcus aureus carriage strains across different continents.
Main Methods:
- Isolation and characterization of 300 Staphylococcus aureus carriage isolates from 1,531 adults across France, Algeria, Moldova, and Cambodia.
- Multilocus sequence typing (MLST) was employed to determine the genetic relatedness of the isolates.
- Phylogenetic analysis was conducted to identify novel lineages and population structures.
Main Results:
- Six clonal complexes (CCs) were found to be prevalent across all four sampled countries.
- Genotype frequency analysis indicated that French and Algerian samples were most similar, while Cambodian samples were most distinct.
- A novel, highly divergent Staphylococcus aureus genotype (ST1223) was identified in Cambodia, related to CC75 found in Australian aboriginal populations.
Conclusions:
- Geographic distance and human migration patterns influence Staphylococcus aureus carriage strain distribution.
- Stochastic clonal expansion plays a role in shaping regional differences in bacterial populations.
- The discovery of a novel lineage in Cambodia highlights the need for continued global surveillance of Staphylococcus aureus diversity.
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