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Published on: May 29, 2017
Identification of PAK4 as a putative target gene for amplification within 19q13.12-q13.2 in oral squamous-cell
Asma Begum1, Issei Imoto, Ken-ichi Kozaki
1Department of Molecular Cytogenetics, Medical Research Institute and School of Biomedical Science, Tokyo Medical and Dental University, Tokyo, Japan.
Abstract:
Amplification of chromosomal DNA is thought to be one of the mechanisms activating cancer-related genes in tumors. To identify the most likely target for amplification in the region 19q13.12-q13.2, detected previously in SKN-3 cells by a genome-wide screening of DNA copy-number aberrations in a panel of oral squamous-cell carcinoma (OSCC) cell lines, we determined the extent of the amplicon, analyzed a panel of cell lines for the expression of candidate genes within the amplicon, and then evaluated growth-suppressive effects by knocking down genes of interest. Reported information about the function and/or expression of each gene, remarkable overexpression in SKN-3 cells and relatively frequent overexpression in additional OSCC lines compared with an immortalized normal oral epithelial cell line, and expression level-dependent proliferation-promoting activity led us to conclude that the p21-activated kinase 4 (PAK4) gene was the most likely target. An immunohistochemical analysis of primary tumors from 105 cases of head and neck SCC including 50 cases of OSCC demonstrated the overexpression of PAK4 to be significantly associated with a poorer prognosis. These findings reveal that the PAK4 overexpression through amplification or other mechanisms promotes the proliferation and/or survival of OSCC cells, and that PAK4 might be a good diagnostic and/or therapeutic target.
Insights
Amplification of the PAK4 gene promotes oral squamous cell carcinoma (OSCC) proliferation. PAK4 overexpression is linked to poorer prognosis, suggesting it as a potential diagnostic and therapeutic target for OSCC.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Chromosomal DNA amplification can activate cancer-related genes in tumors.
- Specific DNA copy-number aberrations in the 19q13.12-q13.2 region were previously identified in oral squamous cell carcinoma (OSCC) cell lines.
Purpose of the Study:
- To identify the specific gene targeted for amplification in the 19q13.12-q13.2 region in OSCC.
- To investigate the role of candidate genes in OSCC proliferation and prognosis.
Main Methods:
- Genome-wide screening for DNA copy-number aberrations.
- Analysis of gene expression in OSCC cell lines and normal oral epithelial cells.
- Gene knockdown experiments to evaluate growth-suppressive effects.
- Immunohistochemical analysis of PAK4 expression in primary head and neck squamous cell carcinoma (HNSCC) and OSCC tumors.
Main Results:
- The p21-activated kinase 4 (PAK4) gene was identified as the most likely amplification target within the 19q13.12-q13.2 region.
- PAK4 showed remarkable overexpression in OSCC cell lines compared to normal cells.
- PAK4 overexpression was significantly associated with a poorer prognosis in HNSCC and OSCC patients.
Conclusions:
- PAK4 overexpression, potentially due to amplification, promotes OSCC cell proliferation and/or survival.
- PAK4 represents a promising diagnostic and/or therapeutic target for OSCC.
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