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Related Concept Videos

Labeling DNA Probes03:31

Labeling DNA Probes

DNA probes are fragments of DNA labeled with a reporter tag to enable their detection or purification. The resulting labeled DNA probes can then hybridize to target nucleic acid sequences through complementary base-pairing, and may be used to recover or identify these regions.
Radioisotopes, fluorophores, or small molecule binding partners like biotin or digoxigenin, are the most widely used reporter tags for labeling DNA probes. These labels can be attached to the probe DNA molecule via...
Southern Blot02:57

Southern Blot

Agarose gel electrophoresis is very useful in separating DNA fragments by size. Running a DNA ladder containing fragments of the known length alongside the sample helps determine the approximate length of the sample DNA fragments. However, additional steps are needed to verify the sequence identity of the sample DNA fragments.
Denatured DNA fragments must be transferred onto a carrier membrane from the gel to make it accessible to a probe - a small ssDNA fragment complementary to the target DNA...
Modern Molecular Taxonomy01:29

Modern Molecular Taxonomy

Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
Sanger Sequencing01:57

Sanger Sequencing

DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...

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Related Experiment Video

Updated: Jun 21, 2026

Using Modified Synthetic Oligonucleotides to Assay Nucleic Acid-Metabolizing Enzymes
05:33

Using Modified Synthetic Oligonucleotides to Assay Nucleic Acid-Metabolizing Enzymes

Published on: July 5, 2024

[Development in ligase-mediated techniques for bio-molecular analysis].

Chao Xu1, Yafeng Zhou, Xian'en Zhang

  • 1State Key Laboratory of Virology, Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China.

Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology
|July 23, 2009
PubMed
Summary
This summary is machine-generated.

Ligase-mediated techniques precisely join adjacent oligonucleotide probes, enabling accurate analysis of DNA mutations, methylation, and protein interactions. These methods offer inherent quality control for reliable bio-molecular detection.

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Area of Science:

  • Molecular Biology
  • Biochemistry
  • Genomics

Context:

  • Ligase-mediated techniques leverage enzymatic activity for precise nucleic acid analysis.
  • Over two decades, these methods have evolved for diverse bio-molecular applications.
  • Integration with other techniques enhances analytical capabilities.

Purpose:

  • To comprehensively review ligase-mediated techniques for bio-molecular analysis.
  • To highlight the accuracy and quality control inherent in these methods.
  • To showcase applications in mutation detection, methylation analysis, and protein interactions.

Summary:

  • Two adjacent oligonucleotide probes are ligated via a phosphodiester bond, contingent on perfect base-pairing at the nick.
  • This enzymatic reaction is foundational for analyzing point mutations, insertions, deletions, CpG island methylation, and single nucleotide polymorphisms (SNPs).
  • The review covers applications in identifying protein-DNA interactions and analyzing specific proteins.

Impact:

  • These techniques provide high accuracy through hybridization and enzymatic processing.
  • Novel approaches offer inherent quality control, ensuring reliable bio-molecular data.
  • The versatility of ligase-mediated methods facilitates advancements in various fields of biological research.