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Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models
Published on: December 9, 2016
CCK(2) receptor splice variant with intron 4 retention in human gastrointestinal and lung tumours
Meike Körner1, Beatrice Waser, Jean Claude Reubi
1Mayo Clinic, Cancer Center and Department of Molecular Pharmacology and Experimental Therapeutics, Scottsdale, Arizona, USA. meike.koerner@pathology.unibe.ch
Abstract:
The wild-type cholecystokinin type 2 (CCK(2)) receptor is expressed in many gastrointestinal and lung tumours. A splice variant of the CCK(2) receptor with retention of intron 4 (CCK(2)Ri4sv) showing constitutive activity associated with increased tumour growth was described in few colorectal, pancreatic and gastric cancers. Given the potential functional and clinical importance of this spliceoform, its occurrence was quantitatively characterized in a broad collection of 81 gastrointestinal and lung tumours, including insulinomas, ileal carcinoids, gastrointestinal stromal tumours (GIST), gastric, colorectal and pancreatic ductal adenocarcinomas, cholangiocellular and hepatocellular carcinomas, small cell lung cancers (SCLC), non-SCLC (nSCLC) and bronchopulmonary carcinoids, as well as 21 samples of corresponding normal tissues. These samples were assessed for transcript expression of total CCK(2) receptor, wild-type CCK(2) receptor and CCK(2)Ri4sv with end-point and real-time RT-PCR, and for total CCK(2) receptor protein expression on the basis of receptor binding with in vitro receptor autoradiography. Wild-type CCK(2) receptor transcripts were found in the vast majority of tumours and normal tissues. CCK(2)Ri4sv mRNA expression was present predominantly in insulinomas (incidence 100%), GIST (100%) and SCLC (67%), but rarely in pancreatic, colorectal and gastric carcinomas and nSCLC. It was not found in wild-type CCK(2) receptor negative tumours or any normal tissues tested. CCK(2)Ri4sv transcript levels in individual tumours were low, ranging from 0.02% to 0.14% of total CCK(2) receptor transcripts. In conclusion, the CCK(2)Ri4sv is a marker of specific gastrointestinal and lung tumours. With its high selectivity for and high incidence in SCLC and GIST, it may represent an attractive clinical target.
Insights
The cholecystokinin type 2 receptor splice variant (CCK2Ri4sv) is a novel marker found in specific gastrointestinal and lung tumors. Its high incidence in small cell lung cancer and GIST suggests it could be a valuable clinical target.
Area of Science:
- Oncology
- Molecular Biology
- Gastroenterology
Background:
- The cholecystokinin type 2 (CCK2) receptor is present in various gastrointestinal and lung tumors.
- A splice variant, CCK2Ri4sv, exhibits constitutive activity and is linked to tumor growth.
- The clinical significance of CCK2Ri4sv necessitates quantitative characterization across diverse tumor types.
Purpose of the Study:
- To quantitatively assess the occurrence of the CCK2Ri4sv splice variant in a wide range of gastrointestinal and lung tumors.
- To compare the expression of CCK2Ri4sv with wild-type CCK2 receptor in tumor tissues and normal counterparts.
- To evaluate the potential of CCK2Ri4sv as a specific biomarker and clinical target for certain cancers.
Main Methods:
- RT-PCR (real-time and end-point) was used to measure CCK2 receptor and CCK2Ri4sv transcript expression.
- In vitro receptor autoradiography assessed total CCK2 receptor protein expression.
- A comprehensive panel of 81 gastrointestinal and lung tumors and 21 normal tissues were analyzed.
Main Results:
- Wild-type CCK2 receptor transcripts were ubiquitously detected in most tumors and normal tissues.
- CCK2Ri4sv mRNA was predominantly found in insulinomas (100%), GIST (100%), and SCLC (67%).
- CCK2Ri4sv expression was rare in pancreatic, colorectal, gastric carcinomas, and non-SCLC, and absent in normal tissues.
Conclusions:
- The CCK2Ri4sv splice variant serves as a specific marker for certain gastrointestinal and lung tumors.
- Its high incidence and selectivity in SCLC and GIST position it as a promising clinical target.
- Further research into CCK2Ri4sv could lead to targeted therapeutic strategies for these specific cancers.
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