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Updated: Jun 21, 2026

Analysis of RNA Processing Reactions Using Cell Free Systems: 3' End Cleavage of Pre-mRNA Substrates in vitro
Published on: May 3, 2014
Assembly of an export-competent mRNP is needed for efficient release of the 3'-end processing complex after
Xiangping Qu1, Søren Lykke-Andersen, Tommy Nasser
1Centre for mRNP Biogenesis and Metabolism, Department of Molecular Biology, Aarhus University, DK-8000 Aarhus C., Denmark.
Abstract:
Before polyadenylated mRNA is exported from the nucleus, the 3'-end processing complex is removed by a poorly described mechanism. In this study, we asked whether factors involved in mRNP maturation and export are also required for disassembly of the cleavage and polyadenylation complex. An RNA immunoprecipitation assay monitoring the amount of the cleavage factor (CF) IA component Rna15p associated with poly(A)(+) RNA reveals defective removal of Rna15p in mutants of the nuclear export receptor Mex67p as well as other factors important for assembly of an export-competent mRNP. In contrast, Rna15p is not retained in mutants of export factors that function primarily on the cytoplasmic side of the nuclear pore. Consistent with a functional interaction between Mex67p and the 3'-end processing complex, a mex67 mutant accumulates unprocessed SSA4 transcripts and exhibits a severe growth defect when this mutation is combined with mutation of Rna15p or another CF IA subunit, Rna14p. RNAs that become processed in a mex67 mutant have longer poly(A) tails both in vivo and in vitro. This influence of Mex67p on 3'-end processing is conserved, as depletion of its human homolog, TAP/NXF1, triggers mRNA hyperadenylation. Our results indicate a function for nuclear mRNP assembly factors in releasing the 3'-end processing complex once polyadenylation is complete.
Insights
Nuclear export factors, like Mex67p, are crucial for removing the 3'-end processing complex from mRNA. This ensures proper mRNA maturation and export, preventing issues like longer poly(A) tails.
Area of Science:
- Molecular Biology
- Cell Biology
- RNA Biology
Background:
- The mechanism for removing the 3'-end processing complex before mRNA nuclear export is poorly understood.
- This complex is involved in mRNA polyadenylation.
Purpose of the Study:
- To investigate if mRNA maturation and export factors are required for the disassembly of the cleavage and polyadenylation complex.
- To understand the role of nuclear export receptor Mex67p in this process.
Main Methods:
- RNA immunoprecipitation assay to monitor Rna15p association with poly(A)(+) RNA.
- Analysis of mutant strains affecting mRNA export and processing.
- In vivo and in vitro poly(A) tail length measurements.
Main Results:
- Defective removal of Rna15p (a cleavage factor) was observed in mex67 mutants and other mRNP assembly mutants.
- Mex67p mutants accumulated unprocessed SSA4 transcripts and showed growth defects when combined with mutations in cleavage and polyadenylation factors.
- RNAs processed in mex67 mutants exhibited longer poly(A) tails.
- Depletion of human TAP/NXF1 also led to mRNA hyperadenylation, indicating conserved function.
Conclusions:
- Nuclear mRNP assembly factors, including Mex67p, play a role in releasing the 3'-end processing complex after polyadenylation.
- Mex67p is functionally linked to the 3'-end processing complex, influencing polyadenylation.
- This function is conserved across species.
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