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In silico drug discovery approaches on grid computing infrastructures.
Antje Wolf1, Mohammad Shahid, Vinod Kasam
1Department of Bioinformatics, Fraunhofer-Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754 Sankt Augustin, Germany. antje.wolf@scai.fraunhofer.dee
Current Clinical Pharmacology
|August 1, 2009
Summary
Grid computing accelerates drug discovery by providing essential computational power and storage for large-scale in silico screening. This eScience approach enhances virtual screening and data analysis for pharmaceutical research.
Area of Science:
- Computational chemistry
- Bioinformatics
- eScience
Background:
- Drug discovery relies on screening compound databases against protein targets.
- In silico methods like virtual screening are crucial but computationally intensive.
- Growing databases and screening approaches necessitate increased computational power and complex workflows.
Purpose of the Study:
- To review the application of Grid computing in in silico drug discovery.
- To explore the potential of Grid infrastructures for handling large-scale computational demands.
- To envision future integrated workflows for drug discovery on Grids.
Main Methods:
- Utilizing Grid computing infrastructures for high computational and data storage demands.
- Leveraging eScience paradigms for collaborative, data- and compute-intensive applications.
- Mobilizing shared computing resources, data collections, and analysis services on demand.
Main Results:
- Grid computing effectively addresses the computational and storage needs of large-scale in silico drug discovery.
- Pharmaceutical industry and academic research have successfully employed Grid infrastructures.
- Grid environments facilitate seamless access to substantial computing resources and data.
Conclusions:
- Grid computing is a vital infrastructure for modern in silico drug discovery.
- Future developments will focus on more complex and integrated workflows on Grids.
- Grids enable efficient target identification, validation, screening, and data mining.
