Related Experiment Video
Updated: Jun 21, 2026

Purification of Ubiquitinated p53 Proteins from Mammalian Cells
Published on: March 21, 2022
Ribosomal protein S3: A multi-functional protein that interacts with both p53 and MDM2 through its KH domain
Sridevi Yadavilli1, Lindsey D Mayo, Maureen Higgins
1Pennington Biomedical Research Center, Louisiana State University System, Baton Rouge, 70808, USA.
Abstract:
The p53 protein responds to cellular stress and regulates genes involved in cell cycle, apoptosis, and DNA repair. Under normal conditions, p53 levels are kept low through MDM2-mediated ubiquitination and proteosomal degradation. In search for novel proteins that participate in this regulatory loop, we performed an MDM2 peptide pull-down assay and mass spectrometry to screen for potential interacting partners of MDM2. We identified ribosomal protein S3 (RPS3), whose interaction with MDM2, and notably p53, was further established by His and GST pull-down assays, fluorescence resonance energy transfer and an in situ proximity ligation assay. Additionally, in cells exposed to oxidative stress, p53 levels increased slightly over 24h, whereas MDM2 levels declined after 6h exposure, but rose over the next 18h of exposure. Conversely, in cells exposed to oxidative stress and harboring siRNA to knockdown RPS3 expression, decreased p53 levels and loss of the E3 ubiquitin ligase domain possessed by MDM2 were observed. DNA pull-down assays using a 7,8-dihydro-8-oxoguanine duplex oligonucleotide as a substrate found that RPS3 acted as a scaffold for the additional binding of MDM2 and p53, suggesting that RPS3 interacts with important proteins involved in maintaining genomic integrity.
Insights
Researchers discovered ribosomal protein S3 (RPS3) interacts with MDM2 and p53, proteins crucial for cellular stress response and DNA repair. RPS3 may play a key role in regulating p53 stability and maintaining genomic integrity.
Area of Science:
- Molecular Biology
- Cellular Biology
- Genomics
Background:
- The p53 protein is a critical regulator of cellular responses to stress, controlling cell cycle, apoptosis, and DNA repair.
- MDM2 protein targets p53 for degradation, maintaining low p53 levels under normal conditions.
- Identifying novel proteins in the p53-MDM2 regulatory loop is essential for understanding cellular stress responses.
Purpose of the Study:
- To identify novel proteins interacting with MDM2 in the p53 regulatory pathway.
- To investigate the role of identified proteins in modulating p53 and MDM2 interactions and cellular stress responses.
Main Methods:
- MDM2 peptide pull-down assay and mass spectrometry to identify interacting partners.
- His and GST pull-down assays, FRET, and in situ proximity ligation assays to confirm interactions.
- siRNA-mediated knockdown and DNA pull-down assays to assess functional roles.
Main Results:
- Ribosomal protein S3 (RPS3) was identified as a novel interacting partner of MDM2 and p53.
- RPS3 knockdown under oxidative stress led to decreased p53 levels and impaired MDM2 E3 ubiquitin ligase activity.
- RPS3 functions as a scaffold, facilitating the binding of MDM2 and p53 to DNA, suggesting a role in genomic integrity maintenance.
Conclusions:
- RPS3 is a novel component of the p53-MDM2 regulatory network.
- RPS3 influences p53 stability and MDM2 ligase activity, particularly under oxidative stress.
- RPS3 may serve as a scaffold protein crucial for DNA repair mechanisms involving p53 and MDM2.
Related Concept Videos
Abnormal Proliferation
Negative Regulator Molecules
Covalently Linked Protein Regulators
These groups modify specific amino acids in a protein.
PI3K/mTOR/AKT Signaling Pathway
Protein Complexes with Interchangeable Parts
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...
Rab Proteins
Rab proteins switch between a cytosolic, GDP-bound inactive state and a membrane-anchored, GTP-bound active state. By themselves, Rabs show slow rates of GDP/GTP exchange and GTP hydrolysis. Thus, Rab proteins are considered...

